DRSC/TRiP Functional Genomics Resources

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Protein Alignment nonA and ML4

DIOPT Version :10

Sequence 1:NP_727962.1 Gene:nonA / 32603 FlyBaseID:FBgn0004227 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_196346.1 Gene:ML4 / 830620 AraportID:AT5G07290 Length:907 Species:Arabidopsis thaliana


Alignment Length:195 Identity:55/195 - (28%)
Similarity:87/195 - (44%) Gaps:43/195 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   304 LYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDYHP--NAEKAKRALDGSMRKGRQ 366
            |:|.|:.:.|.|.||..:||.:|::..:.: ..||..|:.|.|:.  .|:||.|||.|.:.:||:
plant   213 LFVRNVDSSIEDCELGVLFKQFGDVRALHT-AGKNRGFIMVSYYDIRAAQKAARALHGRLLRGRK 276

  Fly   367 LRVRFA-------PNAT--ILRVSNLTPFVSNELLYKSFEIFGPIERASITVDDRGKHMGEGIVE 422
            |.:|::       .|::  .|.|:||...:|||.|:..|..:|.|.....|:.:.    .:..:|
plant   277 LDIRYSIPKENPKENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVRRTMHEN----SQVYIE 337

  Fly   423 FAKKSSASACLR----------------MCNEKCFFLTASLRPCLVDPMEVNDDTD-GLPEKAFN 470
            |.....|...|:                .|.|...|.          |...:||.: |||:.|||
plant   338 FFDVRKAKVALQGLNGLEVAGRQLKLAPTCPEGTSFW----------PQFASDDGEGGLPKMAFN 392

  Fly   471  470
            plant   393  392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nonANP_727962.1 RRM1_p54nrb_like 301..371 CDD:409769 25/68 (37%)
RRM2_p54nrb_like 377..456 CDD:409770 20/94 (21%)
NOPS_NONA_like 447..546 CDD:240580 9/25 (36%)
DUF5401 <499..>618 CDD:375164
PTZ00121 <508..730 CDD:173412
ML4NP_196346.1 RRM1_MEI2_like 210..286 CDD:409944 26/73 (36%)
RRM2_MEI2_EAR1_like 294..364 CDD:409718 16/73 (22%)
RRM_2 741..837 CDD:112856
Blue background indicates that the domain is not in the aligned region.

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