DRSC/TRiP Functional Genomics Resources

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Protein Alignment nonA and pspc1

DIOPT Version :10

Sequence 1:NP_727962.1 Gene:nonA / 32603 FlyBaseID:FBgn0004227 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_001038723.1 Gene:pspc1 / 692285 ZFINID:ZDB-GENE-030131-9530 Length:512 Species:Danio rerio


Alignment Length:445 Identity:152/445 - (34%)
Similarity:249/445 - (55%) Gaps:56/445 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 TFELEPVEVPTETKFSGRNRLYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDYHP 348
            |.:::....|.|..|:.|.||:||||.:|:.|::.:::|..||:..|:|.|.|:.|.|::::...
Zfish    58 TVDIKNFRRPGEKTFTQRCRLFVGNLPSDMADEDFKKLFFKYGDAKEVFINRDRGFGFIRLETRT 122

  Fly   349 NAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVSNELLYKSFEIFGPIERASITVDDRG 413
            .||.||..|||::...|.:|:|||.:...|.|.||:|.||||||.::|..|||:|||.:.|||||
Zfish   123 LAEIAKAELDGTVLGNRPIRIRFATHGAALTVRNLSPVVSNELLEQAFSQFGPVERAIVIVDDRG 187

  Fly   414 KHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLRPCLVDPMEVNDDTDGLPEKAFNKKMPDFNQ 478
            :..|:||||||.|.:|...|..|.:....||.|.||.:::|.|..||.||||||.. :|...:::
Zfish   188 RPTGKGIVEFANKPAARKALDHCADGALLLTTSPRPVILEPTEQYDDEDGLPEKLL-QKSAQYHK 251

  Fly   479 ERSIGPRFADPNSFEHEYGSRWKQLHNLFKTKQDALKRELKMEEDKLEAQMEYARYEQETELLRQ 543
            ||...|.||.|.:||.||.||||.|..:.|.:::.::|.::..::|||.:||.|:.|.:..::||
Zfish   252 EREHKPHFAQPGTFEFEYSSRWKALDEMDKQQREQVERNIQEAKEKLETEMEAAKQEHQLMMMRQ 316

  Fly   544 ELRKREVDNERKKLEWEMREKQAEEMRKREEETMRRHQTEMQSHMNRQEEDMLRRQQE------- 601
            :|.:|:  .|.::|| |:|.   :|::||::..: ||:.|.:    |:||||:|.:::       
Zfish   317 DLMRRQ--EELRRLE-ELRN---QELQKRKQIEL-RHEEERR----RREEDMIRHREQLDIRRQP 370

  Fly   602 ----TLFMKAQQLNSLLDQQEGFGGGGGGNNSTFDNFAGNSNSPFEVFRGNN------------- 649
                :.||::::.:..:::.    |..|..|      .|:|.:|.....||.             
Zfish   371 DGFKSGFMESREQDMRMNEM----GTRGAIN------IGDSFNPVTAISGNQGPTQMMGMGGRVG 425

  Fly   650 ----NNNSTMIGNNAA-PNTQEIK----RLDGPINEITSNFSP-PDLDSDIILVA 694
                :.:|.||.:|.. ||.:..:    ::..|:...|...|| |...|.:::.|
Zfish   426 AMGPDGSSKMIPDNGVMPNERFSEGGPLQMGSPVGGQTGVDSPQPQQHSPMLVGA 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nonANP_727962.1 RRM1_p54nrb_like 301..371 CDD:409769 27/69 (39%)
RRM2_p54nrb_like 377..456 CDD:409770 40/78 (51%)
NOPS_NONA_like 447..546 CDD:240580 39/98 (40%)
DUF5401 <499..>618 CDD:375164 36/129 (28%)
PTZ00121 <508..730 CDD:173412 53/221 (24%)
pspc1NP_001038723.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..56
RRM1_PSP1 75..145 CDD:409999 27/69 (39%)
RRM2_PSP1 151..230 CDD:410002 40/78 (51%)
NOPS_PSPC1 221..314 CDD:240584 37/93 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 451..512 7/30 (23%)
Blue background indicates that the domain is not in the aligned region.

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