DRSC/TRiP Functional Genomics Resources

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Protein Alignment nonA and Pspc1

DIOPT Version :9

Sequence 1:NP_727962.1 Gene:nonA / 32603 FlyBaseID:FBgn0004227 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_079958.3 Gene:Pspc1 / 66645 MGIID:1913895 Length:523 Species:Mus musculus


Alignment Length:408 Identity:160/408 - (39%)
Similarity:234/408 - (57%) Gaps:19/408 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   282 GPTFELEPVEVPTETKFSGRNRLYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDY 346
            |.|.:::....|.|..::.|.||:||||..|||:::.:.:|:.|||.||:|.|.|:.|.|::::.
Mouse    61 GFTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES 125

  Fly   347 HPNAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVSNELLYKSFEIFGPIERASITVDD 411
            ...||.||..|||::.|.|.||:|||.:...|.|.||:|.||||||.::|..|||:|:|.:.|||
Mouse   126 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD 190

  Fly   412 RGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLRPCLVDPMEVNDDTDGLPEKAFNKKMPDF 476
            ||:..|:|.||||.|..|...|..|.:..|.||.:.||.:|:|||..||.||||||.. :|...:
Mouse   191 RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM-QKTQQY 254

  Fly   477 NQERSIGPRFADPNSFEHEYGSRWKQLHNLFKTKQDALKRELKMEEDKLEAQMEYARYEQETELL 541
            ::||...||||.|.:||.||.||||.|..:.|.:::.:.|.::..::||||:||.||:|.:..|:
Mouse   255 HKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLM 319

  Fly   542 RQELRKREVDNERKKLEWEMREKQAEEMRK---REEETMRRHQTEMQSHMNRQEEDMLRRQQETL 603
            ||:|.:|:  .|.::|| |:|.::.::.::   |.||..||.:.||..|   :|::.||||||..
Mouse   320 RQDLMRRQ--EELRRLE-ELRNQELQKRKQIQLRHEEEHRRREEEMIRH---REQEELRRQQEGG 378

  Fly   604 FMKAQQLNSLLDQQEGFGGGGGGNN--STFDNFAGNSNSPFEVFRGNNNNNSTMIGNNAAPNTQE 666
            |......|...:.:.|..|..|..|  ..|......:..|..:...|.||..|:.|....|....
Mouse   379 FKPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGTQGPPPMMGMNMNNRGTIPGPPMGPGPAM 443

  Fly   667 IKRLDGPINEITSNFSPP 684
                 ||  |..:|...|
Mouse   444 -----GP--EGAANMGTP 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nonANP_727962.1 RRM1_p54nrb_like 301..371 CDD:240778 32/69 (46%)
RRM2_p54nrb_like 377..456 CDD:240779 39/78 (50%)
NOPS_NONA_like 447..546 CDD:240580 45/98 (46%)
GBP_C <508..613 CDD:303769 38/107 (36%)
coiled coil 584..595 CDD:293879 3/10 (30%)
coiled coil 603..613 CDD:293879 2/9 (22%)
Pspc1NP_079958.3 RRM1_PSP1 80..150 CDD:241030 32/69 (46%)
Sufficient for paraspeckles localization. /evidence=ECO:0000250 124..357 104/236 (44%)
RRM2_PSP1 156..235 CDD:241033 39/78 (50%)
NOPS_PSPC1 226..319 CDD:240584 42/93 (45%)
Sufficient for perinucleolar caps localization and interaction with NONO. /evidence=ECO:0000250 230..357 53/130 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 460..523
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 74 1.000 Domainoid score I9084
eggNOG 1 0.900 - - E1_KOG0115
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 289 1.000 Inparanoid score I2790
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1274880at2759
OrthoFinder 1 1.000 - - FOG0001632
OrthoInspector 1 1.000 - - mtm8779
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23189
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4077
SonicParanoid 1 1.000 - - X1036
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.960

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