Sequence 1: | NP_727962.1 | Gene: | nonA / 32603 | FlyBaseID: | FBgn0004227 | Length: | 742 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_079958.3 | Gene: | Pspc1 / 66645 | MGIID: | 1913895 | Length: | 523 | Species: | Mus musculus |
Alignment Length: | 408 | Identity: | 160/408 - (39%) |
---|---|---|---|
Similarity: | 234/408 - (57%) | Gaps: | 19/408 - (4%) |
- Green bases have known domain annotations that are detailed below.
Fly 282 GPTFELEPVEVPTETKFSGRNRLYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDY 346
Fly 347 HPNAEKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVSNELLYKSFEIFGPIERASITVDD 411
Fly 412 RGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLRPCLVDPMEVNDDTDGLPEKAFNKKMPDF 476
Fly 477 NQERSIGPRFADPNSFEHEYGSRWKQLHNLFKTKQDALKRELKMEEDKLEAQMEYARYEQETELL 541
Fly 542 RQELRKREVDNERKKLEWEMREKQAEEMRK---REEETMRRHQTEMQSHMNRQEEDMLRRQQETL 603
Fly 604 FMKAQQLNSLLDQQEGFGGGGGGNN--STFDNFAGNSNSPFEVFRGNNNNNSTMIGNNAAPNTQE 666
Fly 667 IKRLDGPINEITSNFSPP 684 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nonA | NP_727962.1 | RRM1_p54nrb_like | 301..371 | CDD:240778 | 32/69 (46%) |
RRM2_p54nrb_like | 377..456 | CDD:240779 | 39/78 (50%) | ||
NOPS_NONA_like | 447..546 | CDD:240580 | 45/98 (46%) | ||
GBP_C | <508..613 | CDD:303769 | 38/107 (36%) | ||
coiled coil | 584..595 | CDD:293879 | 3/10 (30%) | ||
coiled coil | 603..613 | CDD:293879 | 2/9 (22%) | ||
Pspc1 | NP_079958.3 | RRM1_PSP1 | 80..150 | CDD:241030 | 32/69 (46%) |
Sufficient for paraspeckles localization. /evidence=ECO:0000250 | 124..357 | 104/236 (44%) | |||
RRM2_PSP1 | 156..235 | CDD:241033 | 39/78 (50%) | ||
NOPS_PSPC1 | 226..319 | CDD:240584 | 42/93 (45%) | ||
Sufficient for perinucleolar caps localization and interaction with NONO. /evidence=ECO:0000250 | 230..357 | 53/130 (41%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 460..523 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 74 | 1.000 | Domainoid score | I9084 |
eggNOG | 1 | 0.900 | - | - | E1_KOG0115 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 289 | 1.000 | Inparanoid score | I2790 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1274880at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001632 | |
OrthoInspector | 1 | 1.000 | - | - | mtm8779 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | LDO | PTHR23189 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R4077 |
SonicParanoid | 1 | 1.000 | - | - | X1036 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
12 | 11.960 |