DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nonA and SFPQ

DIOPT Version :9

Sequence 1:NP_727962.1 Gene:nonA / 32603 FlyBaseID:FBgn0004227 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_005057.1 Gene:SFPQ / 6421 HGNCID:10774 Length:707 Species:Homo sapiens


Alignment Length:676 Identity:219/676 - (32%)
Similarity:294/676 - (43%) Gaps:140/676 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 GGGAVGGPNQNKNFGNNKGGFVGNRNRNNNRAGNQNRTFPGNNNPNQKPNNETSKADGPNALAKN 138
            |||  ||....:..|..:||....|:.......||||. |....|.|         .||      
Human    10 GGG--GGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRG-PMGPGPGQ---------SGP------ 56

  Fly   139 NEPATAAAGQNQANQNANKGQNQRQGQNQNQNQVHGQGNQ-----------------GGPGNQGG 186
             :|.......:|..|.....|...|....:|...|.|.:|                 .|||...|
Human    57 -KPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG 120

  Fly   187 AGNQGGQGNQG-------GAGNQGNGQG------------------------------------- 207
            .|:.....:..       .....|:|.|                                     
Human   121 VGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPP 185

  Fly   208 -----FRGRNAGNNQGGGFSGGPQNQQRDNRNRSGPRPGGG-----AGGAMNSTNMGGGGGGGG- 261
                 ..|...|..||.| .|||    :..:...||:||||     .||.....:.|||...|| 
Human   186 PPPAAVPGPGPGPKQGPG-PGGP----KGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGR 245

  Fly   262 -----------GGGPRGGEDFFITQRLRSISGPTFELEPVEVPTETKFSGRNRLYVGNLTNDITD 315
                       .|.|.||......:::....|....|..:..|.|..::.|.||:||||..|||:
Human   246 QHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLFVGNLPADITE 310

  Fly   316 DELREMFKPYGEISEIFSNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAPNATILRV 380
            ||.:.:|..|||..|:|.|..|.|.|:|::....||.||..||.:..:|||||||||.:|..|.|
Human   311 DEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSV 375

  Fly   381 SNLTPFVSNELLYKSFEIFGPIERASITVDDRGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTA 445
            .||:|:||||||.::|..|||||||.:.|||||:..|:||||||.|.:|......|:|..|.||.
Human   376 RNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTT 440

  Fly   446 SLRPCLVDPMEVNDDTDGLPEKAFNKKMPDFNQERSIGPRFADPNSFEHEYGSRWKQLHNLFKTK 510
            :.||.:|:|:|..||.|||||| ..:|.|.:.:||...||||...:||:||..|||.|..:.|.:
Human   441 TPRPVIVEPLEQLDDEDGLPEK-LAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQ 504

  Fly   511 QDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKR--------EVDNERKKLEWEMREKQAE 567
            ::.:::.:|..:||||::||.|.:|.:..||||:|.:|        |:.|:..:...||:.:|.|
Human   505 REQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEE 569

  Fly   568 EMRKREEETMRRHQTEMQSHMNRQEEDMLRRQQETLFMKAQQLNSLLDQQE---GFGGGG----- 624
            |.|:||||.|.| |.||:..|.||.|:...|.            ..:|.:|   ..||||     
Human   570 ERRRREEEMMIR-QREMEEQMRRQREESYSRM------------GYMDPRERDMRMGGGGAMNMG 621

  Fly   625 ---GGNNSTFDNFAGNSNSPFEVFRG 647
               |.....|....|.....:|...|
Human   622 DPYGSGGQKFPPLGGGGGIGYEANPG 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nonANP_727962.1 RRM1_p54nrb_like 301..371 CDD:240778 35/69 (51%)
RRM2_p54nrb_like 377..456 CDD:240779 42/78 (54%)
NOPS_NONA_like 447..546 CDD:240580 43/98 (44%)
GBP_C <508..613 CDD:303769 38/112 (34%)
coiled coil 584..595 CDD:293879 5/10 (50%)
coiled coil 603..613 CDD:293879 0/9 (0%)
SFPQNP_005057.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..273 60/286 (21%)
3 X 3 AA repeats of R-G-G 9..27 6/18 (33%)
RRM1_PSF 296..366 CDD:241031 35/69 (51%)
RRM2_p54nrb_like 372..451 CDD:240779 42/78 (54%)
NOPS_PSF 442..538 CDD:240583 42/96 (44%)
PTZ00121 <499..>599 CDD:173412 37/100 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 579..707 21/82 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165154204
Domainoid 1 1.000 74 1.000 Domainoid score I9124
eggNOG 1 0.900 - - E1_KOG0115
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 303 1.000 Inparanoid score I2670
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1274880at2759
OrthoFinder 1 1.000 - - FOG0001632
OrthoInspector 1 1.000 - - mtm8550
orthoMCL 1 0.900 - - OOG6_107408
Panther 1 1.100 - - O PTHR23189
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4077
SonicParanoid 1 1.000 - - X1036
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1413.790

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