DRSC/TRiP Functional Genomics Resources

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Protein Alignment nonA and rbm14b

DIOPT Version :9

Sequence 1:NP_727962.1 Gene:nonA / 32603 FlyBaseID:FBgn0004227 Length:742 Species:Drosophila melanogaster
Sequence 2:XP_021333123.1 Gene:rbm14b / 402858 ZFINID:ZDB-GENE-040426-2455 Length:560 Species:Danio rerio


Alignment Length:159 Identity:46/159 - (28%)
Similarity:73/159 - (45%) Gaps:17/159 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   303 RLYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQL 367
            :|:||||..|.|.:||..:|:.||::  :..::.:.|.|:.:.....||:|.|.|:|...|||.|
Zfish     8 KLFVGNLALDTTQEELSAIFESYGQV--VSCSVLRQFAFVHLQGEGAAERAIRELNGREFKGRNL 70

  Fly   368 RV---RFAP-NATILRVSNLTPFVSNELLYKSFEIFGPIERASITVDDRGKHMGEGIVEFAKKSS 428
            .|   |..| ::|.:.|.||:...:.|.|.:.|:.||.:....       |..|...|....|..
Zfish    71 VVEES
RGRPLHSTKVFVGNLSSMCTTEDLQELFQTFGKVLECD-------KVKGYAFVHMENKED 128

  Fly   429 ASACLRMCNEKCFFLTASLRPCLVDPMEV 457
            |...:...:...|    ..||..|:..:|
Zfish   129 ALQAIEALHGTSF----KGRPLSVELSKV 153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nonANP_727962.1 RRM1_p54nrb_like 301..371 CDD:240778 25/70 (36%)
RRM2_p54nrb_like 377..456 CDD:240779 17/78 (22%)
NOPS_NONA_like 447..546 CDD:240580 4/11 (36%)
GBP_C <508..613 CDD:303769
coiled coil 584..595 CDD:293879
coiled coil 603..613 CDD:293879
rbm14bXP_021333123.1 RRM1_CoAA 7..75 CDD:241052 25/68 (37%)
RRM1_2_CoAA_like 84..149 CDD:240789 16/75 (21%)
AIR1 <150..>187 CDD:331526 1/4 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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