DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment U2af50 and AT1G60900

DIOPT Version :9

Sequence 1:NP_001245708.1 Gene:U2af50 / 32602 FlyBaseID:FBgn0005411 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_176287.3 Gene:AT1G60900 / 842382 AraportID:AT1G60900 Length:589 Species:Arabidopsis thaliana


Alignment Length:477 Identity:186/477 - (38%)
Similarity:256/477 - (53%) Gaps:76/477 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 DNKDRERDRERRRHRSRSRD-RHRERSRDRRHHRNSRRKPSLY---------------------- 54
            |:..|.|||:|||.|.|.|: |||.|||.|...|:.||..|.:                      
plant   125 DHHRRSRDRDRRRSRDRDREVRHRRRSRSRSRSRSERRSRSEHRHKSEHRSRSRSRSRSKSKRRS 189

  Fly    55 -WDVPPPGFEHITPMQYKAMQASGQIPA---------------SVVPDTPQTAVPV-----VGST 98
             :|:.||.....|     |:.|:||:|:               .:||.....|:||     :...
plant   190 GFDMAPPDMLAAT-----AVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQ 249

  Fly    99 ITRQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDE 162
            .||.|||:|||.:|....|:.:..||:|.|..:|...|. |..|:...||.:|.|||:|.||::|
plant   250 ATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE 314

  Fly   163 TTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPA-------IKPAVVSSGVISTVVPDSPHKI 220
            .:.|||.|||.|:|..:|:|||.||.|....|..|:       :....:|||  ||...:.|.:|
plant   315 ASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSG--STGGLEGPDRI 377

  Fly   221 FIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLG 285
            |:||||.|..:.|::|||.|||.||.||||||..||.|||||||.|.|.|:||.:.|.|||:::|
plant   378 FVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMG 442

  Fly   286 DKKLIVQRASVGA-----KNAQNAANTTQSVMLQ----VPGLSNVVTSGPPTEVLCLLNMVTPDE 341
            ||.|.|:||..||     :..:......|.:.||    .||       |.||:::||..:||.|:
plant   443 DKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPG-------GTPTKIVCLTQVVTADD 500

  Fly   342 LRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGVE-VPGCGKVFVEFNSVLDCQKAQQALTGR 405
            |||:|||.:|:||:::|..|:|.:.:|.||||....: .||.||||:|:..|....||:..:.||
plant   501 LRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGR 565

  Fly   406 KFSDRVVVTSYFDPDKYHRREF 427
            ||....||..|:..|||.:.::
plant   566 KFGGNQVVAVYYPEDKYAQGDY 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
U2af50NP_001245708.1 RRM1_U2AF65 103..184 CDD:240676 36/81 (44%)
RRM2_U2AF65 218..294 CDD:240677 45/75 (60%)
RRM3_U2AF65 328..415 CDD:240678 39/87 (45%)
AT1G60900NP_176287.3 U2AF_lg <190..587 CDD:273727 164/410 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 93 1.000 Domainoid score I2560
eggNOG 1 0.900 - - E1_KOG0120
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H110853
Inparanoid 1 1.050 282 1.000 Inparanoid score I867
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D896650at2759
OrthoFinder 1 1.000 - - FOG0003153
OrthoInspector 1 1.000 - - mtm1083
orthoMCL 1 0.900 - - OOG6_101356
Panther 1 1.100 - - O PTHR23139
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2550
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.830

Return to query results.
Submit another query.