DRSC/TRiP Functional Genomics Resources

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Protein Alignment U2af50 and Caper

DIOPT Version :9

Sequence 1:NP_001245708.1 Gene:U2af50 / 32602 FlyBaseID:FBgn0005411 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster


Alignment Length:479 Identity:112/479 - (23%)
Similarity:179/479 - (37%) Gaps:125/479 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 DNKDRER---------DRER-RRHRSRSRD---------RHRERSRDRRHHRNSRRK--PSLYWD 56
            |.:.|:|         ||.| :|.||||||         |.|:||..|...|||||:  .|....
  Fly   151 DRRSRDRRGGSKSLQVDRSRDKRRRSRSRDQQRKRLSPIRERKRSHSRSRDRNSRRRGTNSPRRR 215

  Fly    57 VPPPGFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMM 121
            .||.|.:..||.:.                :|:          .|.||.::...:...|...::.
  Fly   216 SPPNGADRTTPTEL----------------SPE----------ERDARTVFCIQLSQRVRARDLE 254

  Fly   122 EFFNQQMHLVGLAQAAGSPVLACQINLDKNF---AFLEFRSIDETTQAMAFDGINLKGQSLKIRR 183
            |||:      .:.:.....::.|  |..|.|   |::||...:....|:...|..|.|..:.:: 
  Fly   255 EFFS------SVGKVRDVRLITC--NKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQ- 310

  Fly   184 PHDYQPMPGITD-TPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAF 247
             |.......:.: .||.:|...:          .|.::::|.|...:.:|.::.:...|||:.|.
  Fly   311 -HTQAEKNRLQNAAPAFQPKSHT----------GPMRLYVGSLHFNITEDMLRGIFEPFGKIDAI 364

  Fly   248 NLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTT---- 308
            .|:.|..||.||||.|..|.:.....:::..|||.:|..:.:     .||....:...|||    
  Fly   365 QLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLM-----KVGNVTERLDMNTTSLDT 424

  Fly   309 -----------------------QSVMLQVP-GLSNVVTSGPP---------------TEVLCLL 334
                                   :...|.|| ..:|.:.:..|               |:...|.
  Fly   425 DEMDRTGIDLGATGRLQLMFKLAEGAGLAVPQAAANALLATAPQPAPLQQQEVAPSIATQCFILS 489

  Fly   335 NMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGVEVPGCGKVFVEFNSVLDCQKAQ 399
            ||..|....:.....:|.:|:.|||.|:|.|..:.:.      .:...|.|:|:..|......|.
  Fly   490 NMFDPRTETNPTWDVEIRDDVLEECAKHGGVLHIHVD------TISHTGTVYVKCPSTTTAVLAV 548

  Fly   400 QALTGRKFSDRVVVTSYFDPDKYH 423
            .||.||.|:.||:..:|.....||
  Fly   549 NALHGRWFAGRVITAAYVPVINYH 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
U2af50NP_001245708.1 RRM1_U2AF65 103..184 CDD:240676 17/83 (20%)
RRM2_U2AF65 218..294 CDD:240677 21/75 (28%)
RRM3_U2AF65 328..415 CDD:240678 25/86 (29%)
CaperNP_609095.1 RRM1_RBM39_like 238..310 CDD:240729 15/79 (19%)
RRM2_RBM23_RBM39 337..409 CDD:240730 21/76 (28%)
RBM39linker 425..500 CDD:292157 10/74 (14%)
RRM3_RBM39_like 483..567 CDD:240731 26/89 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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