DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sl and plcd3

DIOPT Version :9

Sequence 1:NP_476726.2 Gene:sl / 32601 FlyBaseID:FBgn0003416 Length:1236 Species:Drosophila melanogaster
Sequence 2:XP_002935564.3 Gene:plcd3 / 100497993 XenbaseID:XB-GENE-966578 Length:747 Species:Xenopus tropicalis


Alignment Length:1180 Identity:245/1180 - (20%)
Similarity:371/1180 - (31%) Gaps:555/1180 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 IREIRVGKHSKEFRLFADDCQRFESSKCFVILHGNHFK--LKSFSVVALSEIEADNWVRGLRYMV 137
            |..:|.|..|:..:.:.   :||..:.||.|.    ||  .|:..:.|.||.||.|||:||:.::
 Frog   102 IESVREGHQSEGLQKYG---RRFPETCCFTIA----FKGRRKNLDLAASSEKEALNWVQGLQKLM 159

  Fly   138 KDTLGAPYPLQIDRWLRREYYQIENVNTHSAKATEQSPAQVTIKDFKLFLAGVSCKMTT----GK 198
            |.........::..|: .:|.:         :|......::|.::.|..|..::..:..    ..
 Frog   160 KRAEAMSQREKLVHWI-WDYLR---------QADRDGDEKMTFQEVKDMLKMINIDLNDIYAYNL 214

  Fly   199 FMEHFTEDVRRKHDLKFDDF-SRLYQKLLLPNGFASVLSGSGVANFPYSEDQQVVRPAELKQFLE 262
            |......:.....|.:.::| ::|..:..:...|           ..||.:.:|:...||::||:
 Frog   215 FKACDRSNTNTLEDHEIEEFCTKLMHRPEVEEIF-----------HHYSGEDRVLSAEELQEFLQ 268

  Fly   263 TEQRDVSASEISSAAIASFIRDFVQDVERD---VQEPYLTFPEFVDFLFSKQNDLWNSKYDQVFM 324
            .:..|.:...         .::.:|..|.:   .|...:....|:.:|.|...|::|.|:...:.
 Frog   269 AQGEDATLER---------AKELIQKYELNETAKQHDLMMMEGFMMYLLSDDGDIFNQKHRMAYQ 324

  Fly   325 DMNLPLSSYWIASSHNTYLTGDQFSSESSCEAYARALRMGCRCIELDCWNGPDNLPYIFHGHTIT 389
            ||..||..|:|:||||||||..|...|||.|:|.|....||||:|||||.||...|.|:||||:|
 Frog   325 DMTQPLCHYFISSSHNTYLTNHQLVGESSTESYIRVFMEGCRCVELDCWEGPSGEPVIYHGHTLT 389

  Fly   390 SKIKFMDVIKTIKDHAFTSSEYPVILSIEQNCSLEQQRNMAQALIEVFGDMLLTQPC-DRNEQHL 453
            |||.|.||:.||:|:||.:|.||||||:|.:|.||||..||..|.|:.||||:|:|. ..:...|
 Frog   390 SKILFKDVVTTIRDYAFKNSPYPVILSLENHCGLEQQVKMANHLREILGDMLVTKPLPGADTARL 454

  Fly   454 PSPYQLRRKIILKHKKLPQFDDIANGISSTGSLGHRSSLGGAGGGAHGENDGENVRKVFKEGLLY 518
            |||..|:.|.:||.|||.                                               
 Frog   455 PSPEALKGKFLLKGKKLN----------------------------------------------- 472

  Fly   519 FKDPVDKSWNLYQFVLTHQELIYSSEINESRNGNSEDDDFGLSSSCSLNSNMQQKQKDTSANDEL 583
                                                                             
 Frog   473 ----------------------------------------------------------------- 472

  Fly   584 HFGENWFHGKLEGGRKEADDLLKKYKHFGDGTFLVRESATFVGDYSLSFWRRNRPNHCRIKLKHE 648
                                                                             
 Frog   473 ----------------------------------------------------------------- 472

  Fly   649 NGSIKYYLVENFVFDSLYSLIVYYRKNMLRSSEFSIILKEPVPQPKKHEDQEWFHPNTTKEQAEQ 713
                                                                             
 Frog   473 ----------------------------------------------------------------- 472

  Fly   714 GLYRLEIGSFLVRPSVQSINAFVISFTINRKIKHCRIMQEGRLYGIDTMNFESLVSLINYYTRNP 778
                                        |||                                  
 Frog   473 ----------------------------NRK---------------------------------- 475

  Fly   779 LYRNVKLSHPVSQELLRQALAEAAQGDHSGGHDDNGASNYMGSNLEENVTCKALYSYKANKPDEL 843
                                                       ::||                  
 Frog   476 -------------------------------------------SVEE------------------ 479

  Fly   844 SFPKHAIITNVQRDNSMWWIGDYGGMIKKHLPANYVKVIDSTTEDYNSLNEEGTDGRTDSIEIFG 908
                                                              |||            
 Frog   480 --------------------------------------------------EEG------------ 482

  Fly   909 AVASLFESNDPGIIFKLQIQTPTMQNPFVIGFDNQETAYEWIKAIQEAALIASQLASERRKKERT 973
                                .|.|.                                        
 Frog   483 --------------------KPRMD---------------------------------------- 487

  Fly   974 ARVAKEMSDLIIYFRSVPFREHSWIFQEMSSFPETKAEKQFFQQNTQLFLSYHRNQISRVYPKGQ 1038
              .|||:|||::|.::|.:|.......|||||.|.|..:........| :.|:..|:||:||.|.
 Frog   488 --TAKELSDLVVYCQTVEYRGQPGNVCEMSSFSEDKVRRLIKDSGINL-VRYNARQLSRIYPDGL 549

  Fly  1039 RLDSSNFNPMPFWNVGSQMIALNYQTGDKAMQLNQAKFRNNGQCGYILKPSFM-KSDS-FNPNNP 1101
            |.:|||:.|...||.|.|::|||:||....|.||:.:|::||.|||:|||.|: |.|| |||::|
 Frog   550 RANSSNYCPQEMWNAGCQLVALNFQTPGYTMDLNRGRFQDNGLCGYVLKPEFLRKEDSYFNPDSP 614

  Fly  1102 LCDGLSEVK-VSIRLIAARHLFRGGKSN-----NPQIVVEL--IGASFDTGVKYRTKVNENGFNP 1158
                ..|.| :.:::|:|:.|.:..|..     :|.:.||:  :|...:...||   :..|||||
 Frog   615 ----SKEPKLLFVKVISAQQLPKLNKEKPNSIVDPFVRVEIHGVGKKKEKETKY---ILNNGFNP 672

  Fly  1159 VWNESCEFNVRNPQFAILRFEVQDEDMFAETHFIAQACYPLTCIRQGYRSVILRNKFSEELELSS 1223
            .|||..:..|:.|:.|::||.|:|.|..:...|:.|...|...::||||.|.|.:|....|..::
 Frog   673 YWNEILQLEVQVPELALVRFVVEDYDKTSSNDFVGQYTLPFLSLKQGYRHVHLLSKDGASLSPAT 737

  Fly  1224 LLINIKIANV 1233
            |.:.|:|.::
 Frog   738 LFVQIRIEDL 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slNP_476726.2 PH_PLC_gamma 22..147 CDD:270168 23/73 (32%)
PI-PLCc_gamma 323..>470 CDD:176534 82/147 (56%)
SH2_N-SH2_PLC_gamma_like 584..682 CDD:199829 0/97 (0%)
SH2_C-SH2_PLC_gamma_like 696..796 CDD:198186 3/99 (3%)
SH3_PLCgamma 828..880 CDD:212759 0/51 (0%)
PLCYc 981..1091 CDD:128454 47/109 (43%)
C2_PLC_like 1109..1215 CDD:175974 36/113 (32%)
plcd3XP_002935564.3 PH_PLC_delta 54..169 CDD:270169 23/73 (32%)
EFh_PI-PLCdelta3 174..311 CDD:320048 25/166 (15%)
PI-PLCc_GDPD_SF 323..590 CDD:417475 136/756 (18%)
C2_PLC_like 618..745 CDD:175974 40/129 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D368239at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X101
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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