DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sl and plcb4

DIOPT Version :9

Sequence 1:NP_476726.2 Gene:sl / 32601 FlyBaseID:FBgn0003416 Length:1236 Species:Drosophila melanogaster
Sequence 2:XP_002931782.1 Gene:plcb4 / 100125098 XenbaseID:XB-GENE-1010443 Length:1205 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slNP_476726.2 PH_PLC_gamma 22..147 CDD:270168
PI-PLCc_gamma 323..>470 CDD:176534
SH2_N-SH2_PLC_gamma_like 584..682 CDD:199829
SH2_C-SH2_PLC_gamma_like 696..796 CDD:198186
SH3_PLCgamma 828..880 CDD:212759
PLCYc 981..1091 CDD:128454
C2_PLC_like 1109..1215 CDD:175974
plcb4XP_002931782.1 PH_PLC_beta 17..143 CDD:270167
EFh_PI-PLCbeta4 148..300 CDD:320041
PLN02228 285..819 CDD:177873
PI-PLCc_beta 312..680 CDD:176533
DUF1154 923..966 CDD:399553
PLC-beta_C 1022..1168 CDD:400858
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D368239at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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