DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CalpC and Capn3

DIOPT Version :9

Sequence 1:NP_573118.2 Gene:CalpC / 32597 FlyBaseID:FBgn0260450 Length:681 Species:Drosophila melanogaster
Sequence 2:NP_058813.2 Gene:Capn3 / 29155 RGDID:2269 Length:821 Species:Rattus norvegicus


Alignment Length:792 Identity:216/792 - (27%)
Similarity:354/792 - (44%) Gaps:156/792 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 YERILSDCRSKNVLWEDPDFPAVQSSVFYYQTPPFTFQWKRIMDLADSGSGAVAANSSAAPVFLN 69
            :|::...|..|.||:.||:||..::|:||.|..|..|.|||..::.::            |.|:.
  Rat    61 FEQLHKKCLEKKVLYLDPEFPPDETSLFYSQKFPIQFVWKRPPEICEN------------PRFII 113

  Fly    70 ESA-EFDVVPGKMGDRWLVSCLGLLSSLRNLFYRVVPADQTLASAH-GVFRFRLWWCGEWVEVLV 132
            ..| ..|:..|.:||.|.::.:..|:....|.:||:|.||:....: |:|.|:.|..|:||:|::
  Rat   114 GGANRTDICQGDLGDCWFLAAIACLTLNERLLFRVIPHDQSFTENYAGIFHFQFWRYGDWVDVVI 178

  Fly   133 DDRLPTINGRLAFMQPQASNCFWAALLEKAIAKLHGSYEALKYGTRSDGLTDLLGGV-----VRQ 192
            ||.|||.|.:|.|.:....|.||:||||||.|||||||||||.|..::.:.|..|||     ::.
  Rat   179 DDCLPTYNNQLVFTKSNHRNEFWSALLEKAYAKLHGSYEALKGGNTTEAMEDFTGGVTEFFEIKD 243

  Fly   193 MPILSDNIRPQTLKELLTTTCIVTCLAD------------------------------------- 220
            .|  ||..:  .:::.:....::.|..|                                     
  Rat   244 AP--SDMYK--IMRKAIERGSLMGCSIDDGTNMTYGTSPSGLNMGELIARMVRNMDNSLLRDSDL 304

  Fly   221 --------KSATVAKKNLAERMPNGILVNVNYRLSSLDKVKTLMGDSVQLVCLKDTFSSKPFGEK 277
                    .|.|:.......||..|::....|.::.|::. ...|:.|:||.|::     |:|: 
  Rat   305 DPRASDDRPSRTIVPVQYETRMACGLVKGHAYSVTGLEEA-LFKGEKVKLVRLRN-----PWGQ- 362

  Fly   278 THFLGDWSPMSKTWERVSQVERARLIRQL-GPGEFWLSFCDFVEIFSTMEVVYLDTETSNDEEML 341
            ..:.|.||...|.|..|.:.|:|||..|: ..||||:|:.|||..|:.:|:..|..:....:::.
  Rat   363 VEWNGSWSDGWKDWSFVDKDEKARLQHQVTEDGEFWMSYDDFVYHFTKLEICNLTADALESDKLQ 427

  Fly   342 KSRPLHWKMKMHQGQWKRGVTAGGCRNH-ESFHINPQLLISVQDEQD----------LVIALNQH 395
            .     |.:.:::|:|.||.:||||||. ::|..|||..:.:.:|.|          .::||.|.
  Rat   428 T-----WTVSVNEGRWVRGCSAGGCRNFPDTFWTNPQYRLKLLEEDDDPDDSEVICSFLVALMQK 487

  Fly   396 TAVEPK-------VIGFTMYTWDGE-YMLSECLQKDFFKNHVSYLNS-DYGNTRHVSYHTHLEAG 451
            ...:.:       .|||.:|....| :...:.||||||..:.|...| .|.|.|.||....|...
  Rat   488 NRRKDRKLGANLFTIGFAIYEVPKEMHGNKQHLQKDFFLYNASKARSKTYINMREVSQRFRLPPS 552

  Fly   452 HYVLIPTTYEPAEEAHFTVRILGTGSFRLSCLETQTMILLD------------------------ 492
            .||::|:||||.:|..|.:|:.  ...|....|.:..|.:|                        
  Rat   553 EYVIVPSTYEPHQEGEFILRVF--SEKRNLSEEAENTISVDRPVKKKKNKPIIFVSDRANSNKEL 615

  Fly   493 ---------------------PFPALKSTDAERCGGPKVKSVCQYEPVYMQLADENKTINCFELH 536
                                 |.|....||.|.      :...|:..::.|:|.::..|...||.
  Rat   616 GVDQEAEEGKDKTGPDKQGESPQPRPGHTDQES------EEQQQFRNIFRQIAGDDMEICADELK 674

  Fly   537 ELLEACL--PNDYIKGCANIDICRQVIALQDRSGSGRITFQQFKTFMVNLKSWQGVFKMYTKEKA 599
            .:|...:  ..|.......::.||.:|||.|..||||:..|:|......:|:||.:||.|..:.:
  Rat   675 NVLNTVVNKHKDLKTQGFTLESCRSMIALMDTDGSGRLNLQEFHHLWKKIKAWQKIFKHYDTDHS 739

  Fly   600 GILRAERLRDALCDIGFQLSTDIMNCLIQRYIRKDGTLRLSDFVSAVIHLTTAFNQFHLKNYGQV 664
            |.:.:..:|:|:.|.||.|::.:.:.:..||..|...:....|:...:.|...|..||..:....
  Rat   740 GTINSYEMRNAVNDAGFHLNSQLYDIITMRYADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGD 804

  Fly   665 NVIEVHLHDWIK 676
            .:|::::.:|::
  Rat   805 GIIKLNVLEWLQ 816

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CalpCNP_573118.2 CysPc 7..329 CDD:238004 113/374 (30%)
Calpain_III 346..483 CDD:238132 50/156 (32%)
FRQ1 <567..648 CDD:227455 23/80 (29%)
Capn3NP_058813.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37
Peptidase_C2 77..415 CDD:395523 109/360 (30%)
Domain III 418..586 51/174 (29%)
Calpain_III 436..574 CDD:395848 48/137 (35%)
Calpain_u2 583..653 CDD:406940 8/75 (11%)
Linker 587..649 7/67 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 603..651 5/53 (9%)
Domain IV 650..820 43/167 (26%)
EFh_PEF_CAPN3 653..821 CDD:320065 43/164 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0045
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704215at2759
OrthoFinder 1 1.000 - - FOG0000071
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10183
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.920

Return to query results.
Submit another query.