DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cyp1 and Ranbp2

DIOPT Version :10

Sequence 1:NP_523366.2 Gene:Cyp1 / 32595 FlyBaseID:FBgn0004432 Length:227 Species:Drosophila melanogaster
Sequence 2:XP_038954525.1 Gene:Ranbp2 / 294429 RGDID:1560047 Length:3114 Species:Rattus norvegicus


Alignment Length:212 Identity:122/212 - (57%)
Similarity:147/212 - (69%) Gaps:9/212 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 AAAFQIAESAILANKSITLASSACSVNRGQLQFG-IQIVREYSKASKMSTLPRVFFDMTADNEPL 80
            |..|:..|......|.|    ..|..|..:||.| :.:..|.||    .|.|.||||:..|.|||
  Rat  2911 AVRFKTKEITECFKKKI----EECQQNIMKLQNGQVSLAAELSK----ETNPVVFFDVCVDGEPL 2967

  Fly    81 GRIVMELRSDVVPKTAENFRALCTGEKGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 145
            |||:|||.|::||:||||||||||||||||:|.||||||:|:|:|||||.|.:|||||:||||:|
  Rat  2968 GRIIMELFSNIVPQTAENFRALCTGEKGFGFKNSIFHRVVPDFICQGGDITKYNGTGGQSIYGDK 3032

  Fly   146 FPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYGS 210
            |.||||:|||||.|:|||||.|.|||.|||||...|...||.||||||.|.:|:|.|:||||:||
  Rat  3033 FDDENFDLKHTGPGLLSMANCGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGS 3097

  Fly   211 QSGKTSKKIIVANSGSL 227
            ..|..|::|.:...|.|
  Rat  3098 PKGSVSRRICITECGQL 3114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp1NP_523366.2 cyclophilin_ABH_like 67..225 CDD:238907 106/157 (68%)
Ranbp2XP_038954525.1 LapB <33..191 CDD:442196
TPR repeat 59..89 CDD:276809
RanBD1_RanBP2-like 1180..1296 CDD:270203
zf-RanBP 1345..1374 CDD:395516
RanBP2-type Zn finger 1350..1369 CDD:275375
zf-RanBP 1410..1438 CDD:395516
RanBP2-type Zn finger 1414..1433 CDD:275375
zf-RanBP 1473..1502 CDD:395516
RanBP2-type Zn finger 1477..1496 CDD:275375
zf-RanBP 1533..1563 CDD:395516
RanBP2-type Zn finger 1537..1556 CDD:275375
zf-RanBP 1596..1625 CDD:395516
RanBP2-type Zn finger 1600..1619 CDD:275375
zf-RanBP 1655..1683 CDD:395516
RanBP2-type Zn finger 1659..1678 CDD:275375
RanBD2_RanBP2-like 1902..2018 CDD:269998
RanBD3_RanBP2-like 2199..2315 CDD:270204
IR1-M 2529..2591 CDD:463488
IR1-M 2605..2665 CDD:463488
RanBD4_RanBP2-like 2815..2931 CDD:269999 5/23 (22%)
cyclophilin_ABH_like 2954..3112 CDD:238907 106/157 (68%)
Blue background indicates that the domain is not in the aligned region.

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