DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SWIP and washc4

DIOPT Version :9

Sequence 1:NP_573116.2 Gene:SWIP / 32594 FlyBaseID:FBgn0030739 Length:1102 Species:Drosophila melanogaster
Sequence 2:XP_694117.3 Gene:washc4 / 565752 ZFINID:ZDB-GENE-100427-4 Length:1173 Species:Danio rerio


Alignment Length:1203 Identity:340/1203 - (28%)
Similarity:595/1203 - (49%) Gaps:202/1203 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LRDYGSFISEHDGKLKLLRDKVPNR--DVSESAQCVYMSPVVEVNFMGNDSMAPDRSFEESEL-- 67
            :::|..|:.|:..:|:.:.:.:.:.  ||.:..    :.|:..       .:.|   :|:|.|  
Zfish    28 VKNYERFLEEYIAQLQGIEEALDDSIGDVWDFT----LDPITL-------KLLP---YEQSSLLE 78

  Fly    68 -------VANKPLTTLANLCNQCRNLSRKAK-RFQLAFLFSDFRLDDTLPPHTHTSEGSAGLEG- 123
                   |.||.:|..|.||.:.:.|..:|: :|....|:....:.||           :.:|| 
Zfish    79 LIKTDNKVLNKVITVYAALCCEVKKLKHEAETKFYNGLLYYGEGVSDT-----------SVVEGE 132

  Fly   124 SLVRMSSSMDFFCQVYFLLNRMIVILQNLWRQIAA------SVSVPMDINEVHIFAVFDAMSELL 182
            |.::|...:.|..::...::|...::.|:..|:||      ..:..::...||...|::.:.|||
Zfish   133 SQIQMGRFVSFLQELSCFVSRCFEVVVNMVHQLAALYNSSKGATKIIESTGVHFQTVYEHLGELL 197

  Fly   183 EHIVVFNE-LANQSKISTMWALYKKWLMNLSNSQSANLELNGLSTSLMDIENLITKDFFRI---L 243
            ..::..:| :.|.:.:...|.:||:.|.::.:: .|...:.  ...|...|.||    |::   |
Zfish   198 VVLITLDEIMENHATLKEHWKMYKRLLKSVHHN-PAKFAIP--EEKLKPFEKLI----FKLEGQL 255

  Fly   244 LDNLME---LKKQF---GLN-SVSPITQHSN--AYIRRQLLDVDANPSNELKNYEDPKHIIRLTT 299
            ||:::.   ::::|   |.| |||..:..:.  ||..|.:.   ||..::|   .:|..|.:...
Zfish   256 LDSMIFQACVEQRFDNPGENVSVSKNSAFAEEFAYNIRTIF---ANVESKL---GEPSEIDQRDK 314

  Fly   300 F-----VVVVH-ELGIQMEGKLVKNVIDLVARHKQVPLNRSVFWSPSGFLSLHAKTLMKSSARSQ 358
            :     :.|:| .:...::.|:.|:::|:..:...|.|..::.|.|..||      :.|..|.::
Zfish   315 YTGVCGLFVLHFHIFRAVDKKIYKSLLDVCKKVPAVTLAANIIWFPDTFL------INKVPAAAK 373

  Fly   359 DGQGPKVHSTVLEKFRLSDQRTCRQLGVQ----------------LSLWSIQMQRV--------- 398
                      :::|..|...|:.|.:.:|                ::.|.::|:.:         
Zfish   374 ----------LMDKKSLQSIRSSRDVFLQQKAQTLMKDMQSYYIFVTSWMMKMESILSKEPKPDK 428

  Fly   399 FDVGVFGHLKTFLQLILNGHSYADQVNLLAVALINRHVALMTPMTRNDWIVVSRLLQYLKVIQKT 463
            ....:......|:|.||    ||..::.:....:|.::::..|||:.....:.||::.||.::.|
Zfish   429 LSEDLSNRCNIFVQGIL----YAYSISTIIKTTMNMYMSMQRPMTKTSVKALCRLVELLKAVEHT 489

  Fly   464 FESNQINFVRFISSLI-QWQKQKVIHLLHTTKKKIVVLKLLQRKINFLATIKLAEKSIMGFPSKQ 527
            |....:.....:|.:. |.|.|.::.:....|:.|...|..:::::.|:.:.|||.::.|..:|:
Zfish   490 FHRRSLVVADSVSHITQQLQSQALVSISMAKKRVISDKKYSEQRLDVLSALVLAENTLNGPSTKE 554

  Fly   528 RLTFVNLALG------EFLDNRLLPADNQKLIKSILHRVNSISDIMRNIGGQLNTSESSSLVYNH 586
            |...::|||.      .|.|..|||      ::.:|.:::.||::...:..|.:.|      :.:
Zfish   555 RRLIMSLALSVGTQMKTFKDEELLP------LQLVLKKLDLISELRERVKVQCDCS------FLY 607

  Fly   587 W-------FLDTSVLKEYTELQRNPY---SLQNLVSVSHH------LDKIMAMFRGSRCPKQSAN 635
            |       :|| .|.:...:..|..|   :|::.|....|      .|:::..:          :
Zfish   608 WHRTVFPIYLD-DVYENAVDAARIHYMFSALRDCVPTMLHAKHMESCDQLLECY----------D 661

  Fly   636 DLIIEFLSNHL--------EFFLRVEALSHLFQSQDQPFQQSALDYRLCINAVAVENDGDYNIIK 692
            ..|:|.|:.||        |..||:...:||......||:....|.....:...:.....:..||
Zfish   662 TEIMEILNEHLLDKLCKEIEKDLRLSVHTHLKLDDRNPFKVGMKDLAHFFSLKPIRFFNRFIDIK 726

  Fly   693 DHLENYFTATFYNLTTIAPHDWKSYEKMRHLANKVLQLQPIDDHLPNQIIDQGIDVLQIMRNIHT 757
            .::.:|...|||||||:|.|||.:|.:||:||.:...|...:.|||:|.::||:|||:||||||.
Zfish   727 AYVTHYLDKTFYNLTTVALHDWATYSEMRNLATQRYGLVMTEAHLPSQTLEQGLDVLEIMRNIHV 791

  Fly   758 FASSYAYNMNLQVFVETNSRSKHLDIIGTRHVANSVQTHGTGIINTTVNFIYQFLRQKFYTFSTF 822
            |.|.|.||:|.|:|:|..|.:|||:.|..||:|||::||||||:||||||.|||||:|||.||.|
Zfish   792 FVSRYLYNLNNQIFIERTSNNKHLNTINIRHIANSIRTHGTGIMNTTVNFTYQFLRKKFYIFSQF 856

  Fly   823 LHDEQIKSRLLKELRFHTEHKHSKSYQSYPYERADSFLKKIRRLGCSSNGETYMDLFRKVITQVG 887
            ::||.|||||:|::||..|.| .::.|.||:|||:.|.:.||:||.:.:|::|:|.||::|:|:|
Zfish   857 MYDEHIKSRLIKDIRFFRETK-DQTDQKYPFERAEKFNRGIRKLGLTPDGQSYLDQFRQLISQIG 920

  Fly   888 NAVGYVRLLQAGSKNANFRNRSYKTRFDS------NFSCGGSKVHEATEGSIREYEKSLGHMKEC 946
            ||:||||::::|..:.    .|...||..      ||.   ..|.|  ||...|.:|:...:...
Zfish   921 NAMGYVRMIRSGGLHC----CSSAIRFVPDLEDIVNFE---ELVKE--EGLSEETQKASSQLDCV 976

  Fly   947 YSD-------STNYFKLLLQGFQPFLCNPHNHHLRTFYLITPALIMNYIDYRVKQKLKIYKKDQT 1004
            .||       .|.|||:|:..|.|...:..|.|||.||:|.|.|.:|::::.:..|.|:.||::.
Zfish   977 LSDLTSNSAEGTEYFKMLVGVFAPEFRSIKNMHLRNFYMIVPPLTVNFVEHSISCKEKLNKKNKV 1041

  Fly  1005 KISLFEDGFAIGLVYILNMLNQQTEFHELGWSQTITQHLNAERSKVRDILAGQQRTAPEQLDEKL 1069
            ..:..:||||:|:.|||.:|:|..||..|.|.|.:.:....|.:.|    ..:|.......||||
Zfish  1042 GAAFTDDGFAMGVAYILKLLDQYQEFDSLHWFQAVREKYVKEMNAV----VKEQNVQSTSQDEKL 1102

  Fly  1070 HQTVAITERHVNAYEHEYNLLYATLSSSEIFFQ 1102
            .||:.:|::.::.|..|:.|||.:|||:.|||:
Zfish  1103 MQTMNLTQKRLDVYLQEFELLYFSLSSARIFFR 1135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SWIPNP_573116.2 WASH-7_N 11..573 CDD:291415 129/631 (20%)
WASH-7_mid 592..910 CDD:291414 135/334 (40%)
WASH-7_C 929..1102 CDD:291416 62/179 (35%)
washc4XP_694117.3 WASH-7_N 34..600 CDD:291415 129/629 (21%)
WASH-7_mid 612..945 CDD:291414 140/348 (40%)
WASH-7_C 966..1135 CDD:291416 59/172 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583247
Domainoid 1 1.000 261 1.000 Domainoid score I1919
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H123926
Inparanoid 1 1.050 431 1.000 Inparanoid score I1693
OMA 1 1.010 - - QHG54471
OrthoDB 1 1.010 - - D186054at2759
OrthoFinder 1 1.000 - - FOG0006906
OrthoInspector 1 1.000 - - oto38959
orthoMCL 1 0.900 - - OOG6_104381
Panther 1 1.100 - - LDO PTHR31409
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4324
SonicParanoid 1 1.000 - - X5010
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1514.940

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