DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SWIP and washc4

DIOPT Version :10

Sequence 1:NP_573116.2 Gene:SWIP / 32594 FlyBaseID:FBgn0030739 Length:1102 Species:Drosophila melanogaster
Sequence 2:XP_004912961.2 Gene:washc4 / 100379946 XenbaseID:XB-GENE-5914213 Length:1171 Species:Xenopus tropicalis


Alignment Length:1185 Identity:331/1185 - (27%)
Similarity:586/1185 - (49%) Gaps:158/1185 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 AEDILRDYGSFISEHDGKLKLLRDKVPNR--DVSESAQCVYMSPVVEVNFMGNDSMAPDRSFEES 65
            ||..|::||.|:.|:..:|:.:.:.:.:.  ||.:.:    :.|:..       .:.|   :|:|
 Frog    26 AEVQLKNYGKFLEEYTSQLRRIENALDDSIGDVWDFS----LDPIAL-------KLVP---YEQS 76

  Fly    66 EL---------VANKPLTTLANLCNQCRNLSRKAK-RFQLAFLFSDFRLDDTLPPHTHTSEGSAG 120
            .|         |.||.:|..|.||.:.:.|..:|: :|....||              ..||:|.
 Frog    77 SLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLF--------------YGEGAAE 127

  Fly   121 ---LEG-SLVRMSSSMDFFCQVYFLLNRMIVILQNLWRQIA----ASVSVP--MDINEVHIFAVF 175
               :|| |.::|...:.|..::...:.|...::.|:..|:|    ::.:.|  ::...||...::
 Frog   128 SSIVEGDSQIQMGRFISFLQELSCFVTRCYEVVMNVVHQLAGLYTSNRNEPKIIETTGVHFLTMY 192

  Fly   176 DAMSELLEHIVVFNE-LANQSKISTMWALYKKWLMNLSNSQSANLELNGLSTSLMDIENLITKDF 239
            :.:.|||..::..:| :.|.:.:...|.:||:.|.::.::..   :.......|...|.|:.| .
 Frog   193 EHLGELLTVLLTMDEIIENHATLKDHWTMYKRLLKSVHHNPG---KFGIQEDKLKPFEKLLLK-L 253

  Fly   240 FRILLDNLME---LKKQF-GLN---SVSPITQHSNAY---IRRQLLDVDANPSNELKNYEDPKHI 294
            ...|||.::.   :::|| .||   |||.....:..:   ||....:|:.. ..|....:..:..
 Frog   254 ESQLLDGMLFQGCVEQQFDSLNGGVSVSKNGTFAEEFAHNIRTIFSNVEVK-LGEASEIDQRERY 317

  Fly   295 IRLTTFVVVVHELGIQMEGKLVKNVIDLVARHKQVPLNRSVFWSPSGFL----SLHAKTLMKSSA 355
            :.|....|:..::...::.|..|::::...:...:.|..::.|....||    ...||.:.|.|.
 Frog   318 VGLCGLFVLYFQIFRTVDKKFYKSLLEACKKVPAITLTANIIWYADHFLIQKVPAAAKLIDKKSL 382

  Fly   356 RSQDGQGPKVHSTVLEKFRLSDQRTCRQLGVQLSLWSIQMQRV---------FDVGVFGHLKTFL 411
            ::...|    ..:.|:....|..:..:...|.:|.|.::|:.:         |...:......|:
 Frog   383 QAIKTQ----RDSYLQTKAQSLSKDVQSYYVFVSAWMMKMESILSKEQKAEKFAEDLTNRCNVFV 443

  Fly   412 QLILNGHSYADQVNLLAVALINRHVALMTPMTRNDWIVVSRLLQYLKVIQKTFESNQINFVRFIS 476
            |    |..||..::.:....:|.::::..|||:.....:.||::.||.|:.||....:.....:|
 Frog   444 Q----GFLYACGLSNIIKTTMNLYMSMQKPMTKTSVKALLRLVELLKAIEHTFHRRSMVVADSVS 504

  Fly   477 SLIQWQKQKVIHLLHTTKKKIVV-LKLLQRKINFLATIKLAEKSIMGFPSKQRLTFVNLALG--- 537
            .:.|..:.:.:..:...||:::. .|..:::::.|:.:.|||.::.|..::||...|:|||.   
 Frog   505 HITQHLQHQALAAIAVAKKRVISDKKYSEQRLDVLSALVLAENTLNGPSTRQRRLIVSLALSVGT 569

  Fly   538 ---EFLDNRLLPADNQKLIKSILHRVNSISDIMRNIGGQLNTSESSSLVYNHW-------FLDTS 592
               .|.|..|||      :..::.:::.||::...:..|.|      ..:.:|       :|| .
 Frog   570 QMKTFKDEELLP------LLLVMKKLDLISELRERVRSQCN------CCFLYWHRAVFPIYLD-D 621

  Fly   593 VLKEYTELQRNPYSLQNLVSV------SHHLD-----------KIMAMFRGSRCPKQSANDLIIE 640
            |.:...:..|..|....|.|.      :.||:           :|||:.          .:.:::
 Frog   622 VYENAVDASRLHYMFSALWSCVPDMMQARHLESYEVLLESYDKEIMAVM----------TEHLLD 676

  Fly   641 FLSNHLEFFLRVEALSHLFQSQDQPFQQSALDYRLCINAVAVENDGDYNIIKDHLENYFTATFYN 705
            .|...:|..||:...:||...:..||:....|.....:...:.....:..||..:.:|...||||
 Frog   677 ILCKEIEKDLRLSVHTHLQLDERNPFKIGMKDLAHFFSVKPIRFFHRFIDIKAFVTHYLDKTFYN 741

  Fly   706 LTTIAPHDWKSYEKMRHLANKVLQLQPIDDHLPNQIIDQGIDVLQIMRNIHTFASSYAYNMNLQV 770
            |||:|.|||.:|.:||:||.:...|...:.|||:|.::||:|||:||||||.|.|.|.||:|.|:
 Frog   742 LTTVALHDWATYSEMRNLATQRYGLTMTEPHLPSQTLEQGLDVLEIMRNIHVFVSRYLYNLNNQI 806

  Fly   771 FVETNSRSKHLDIIGTRHVANSVQTHGTGIINTTVNFIYQFLRQKFYTFSTFLHDEQIKSRLLKE 835
            |:|..|.:|||:.|..||:|||::||||||::|||||.|||||:|||.||.|::||.|||||:|:
 Frog   807 FIERTSNNKHLNTINIRHIANSIRTHGTGIMSTTVNFTYQFLRKKFYIFSQFMYDEHIKSRLIKD 871

  Fly   836 LRFHTEHKHSKSYQSYPYERADSFLKKIRRLGCSSNGETYMDLFRKVITQVGNAVGYVRLLQAGS 900
            :|:..|.| .::.|.||:|||:.|.:.||:||.:.:|::|:|.||::|:.:|||:||||::::|.
 Frog   872 IRYFREVK-DQNDQKYPFERAEKFNRGIRKLGLTPDGQSYLDQFRQLISHIGNAMGYVRMIRSGG 935

  Fly   901 KNANFRNRSYKTRFDS------NFS--CGGSKVHEATEGSIREYEKSLGHMKECYSDSTNYFKLL 957
            .:.    .|...||..      ||.  .....:.|.|:.:.|:.:..|..:....::.|.|||:|
 Frog   936 LHC----CSNAIRFVPDLEDIVNFEELVKEEGLSEETQKAARQLDSVLSDLTRNSAEGTEYFKML 996

  Fly   958 LQGFQPFLCNPHNHHLRTFYLITPALIMNYIDYRVKQKLKIYKKDQTKISLFEDGFAIGLVYILN 1022
            :..|.|...:..|.|||.||:|.|.|.:|::::.:..|.|:.||::...:..:||||:|:.|||.
 Frog   997 VDVFSPEFRSAKNIHLRNFYIIVPPLTLNFVEHSINCKEKLNKKNKVGAAFTDDGFAMGVAYILK 1061

  Fly  1023 MLNQQTEFHELGWSQTITQHLNAERSKVRDILAGQQRTAPEQLDEKLHQTVAITERHVNAYEHEY 1087
            :|:|..||..|.|.|::.:....|:..|    :.||.......||||.||:.:|::.::.|..|:
 Frog  1062 LLDQYQEFDSLHWFQSVREKYVKEKRAV----SKQQNVQSNNQDEKLLQTMNLTQKRLDIYLQEF 1122

  Fly  1088 NLLYATLSSSEIFFQ 1102
            .|||.:|||:.|||:
 Frog  1123 ELLYFSLSSARIFFR 1137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SWIPNP_573116.2 WASH-4_N 11..573 CDD:434178 124/614 (20%)
WASH-7_mid 582..910 CDD:434177 134/351 (38%)
WASH-7_C 929..1102 CDD:464293 60/172 (35%)
washc4XP_004912961.2 WASH-4_N 34..602 CDD:434178 124/614 (20%)
WASH-7_mid 607..951 CDD:434177 137/359 (38%)
WASH-7_C 968..1137 CDD:464293 60/172 (35%)

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