DRSC/TRiP Functional Genomics Resources

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Protein Alignment Had1 and hacd-1

DIOPT Version :9

Sequence 1:NP_001285320.1 Gene:Had1 / 32592 FlyBaseID:FBgn0286508 Length:315 Species:Drosophila melanogaster
Sequence 2:NP_503421.1 Gene:hacd-1 / 178638 WormBaseID:WBGene00019978 Length:299 Species:Caenorhabditis elegans


Alignment Length:295 Identity:75/295 - (25%)
Similarity:125/295 - (42%) Gaps:39/295 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KNEK--VGIVGSGLIGRSWSMLFASVGYQVVLYDILPEQVSTALTATQKELQDLEAKGLLRGKLT 66
            :|.|  |.|.|:|::|...:.:....||.|.||....:::..|....:|.|..:.:|     |.|
 Worm     7 ENPKPLVAIFGAGMMGSGIAQVCLQAGYPVNLYGRSEKKLLEARETIKKNLIRVASK-----KKT 66

  Fly    67 ------------AAQQFACISGTNDLKELVKGAIFVQECIPERLDLKKALYKQLDAVVGPNTILS 119
                        |..|...:....|:....:.|....|.:.|.||||..:::.:......|.:|.
 Worm    67 DVPMEPAALEEIAQIQLDLLQIHTDIPSAAEDAAMAIEAVAENLDLKLDIFQTIQKTCPQNCMLI 131

  Fly   120 SSTSTFLPSLFSADLKNKANVLVSHPVNPPYYVPLVEIVPAPWTKPEWVKKTRALMEEIGQKPVT 184
            ::||:...|.....::|.|.....|..||...:.|||:|....|.||.........:||.:.||.
 Worm   132 TNTSSLKLSQMLPVIQNPALFAGLHFFNPVPVMKLVEVVSTDETSPETTNFLFNFCKEIKKLPVA 196

  Fly   185 LSREIEGFALNRIQYAILNETWRLVEAGILNVKDIDSVMSNGLGPRYAFLGPLETAHLNAEGMAN 249
             :::..||.:||:....|.::.|::|.|....:|||:.|.  .|..|. :||:|        :.:
 Worm   197 -AKDTPGFIVNRLLIPYLMDSIRMLERGDATKEDIDTAMR--FGTSYP-MGPIE--------LCD 249

  Fly   250 Y--FERYSNTIYAVSETM------GPTPKMEGPVA 276
            |  .:...:|:....||:      .|.|.|:..||
 Worm   250 YVGLDVLQSTLKIFRETIPGDARFAPIPLMDKLVA 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Had1NP_001285320.1 PRK06129 7..310 CDD:235706 74/292 (25%)
3HCDH_N 7..183 CDD:280833 46/189 (24%)
3HCDH 191..>265 CDD:279114 20/75 (27%)
hacd-1NP_503421.1 FadB 13..299 CDD:224170 73/289 (25%)
3HCDH_N 13..200 CDD:280833 47/192 (24%)
3HCDH 202..299 CDD:279114 26/94 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1250
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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