DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3632 and mtmr12

DIOPT Version :9

Sequence 1:NP_001096996.1 Gene:CG3632 / 32589 FlyBaseID:FBgn0030735 Length:1250 Species:Drosophila melanogaster
Sequence 2:XP_012823020.2 Gene:mtmr12 / 100495643 XenbaseID:XB-GENE-6051019 Length:748 Species:Xenopus tropicalis


Alignment Length:884 Identity:176/884 - (19%)
Similarity:304/884 - (34%) Gaps:314/884 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 IRAAESYPKSQMEKEDSQLFVPFQELAGESIKYLGRTDD--------GILALSNYRI-FLS---- 73
            |...|..|.:  ||.|:...:|.:.:..|:...|..|.|        |.|..:|:|| ||.    
 Frog    27 IDVKEKEPSA--EKVDNVPLLPGEFVLCEANTVLKCTQDEGSQRGVYGRLICTNFRITFLGDEPP 89

  Fly    74 -------KQSTGYETYVPLGLIESVQVRDLF------------------QLIVNCKDASTVR-C- 111
                   |.....|..:.|..::  |:..::                  :|||.|||..... | 
 Frog    90 DDTIPEFKNKIFGENDITLQCVD--QLYGVYDDKKKAILSGQGLKKYPERLIVYCKDFRVFHFCL 152

  Fly   112 SFPSAEQCSDWQRRIHLMIGV------PESLETLFAFPFYSWTCDVLGSGNGSGIVSAQANGNGL 170
            |:...|:..      .::.|:      |:.|:.||.|.:                          
 Frog   153 SYTKQEEVK------RIVSGIIHHTQSPKLLKRLFLFSY-------------------------- 185

  Fly   171 IAKDRCLTLHNGLAKPTANVTASNPLPDPASETISAAMSNRLQRSVRYES--DFKNEVARLGFDL 233
                       ..|.|...||:.                  :::::.:|:  |:..|:.|    .
 Frog   186 -----------AAAVPRYKVTSF------------------MEKTLMFETVKDWMAELER----T 217

  Fly   234 KGS--WRISTANADFKLCPSYPPKLLVPCCITDEMLHNVANFRGSRRLPAVVWRHQKSGAILARC 296
            ||:  :::.|||..:|:....|...:||..:.::.|   .:|:| |.:|...|......|:|...
 Frog   218 KGNLHYKVLTANEGYKVSERLPQYFVVPMSLPEDTL---TDFQG-RGVPIWCWSCPNGSALLKMA 278

  Fly   297 SQPEVGWLGWRNTRDEQLLKALADACAFDRGEHARHSTCANAKAQPTKGSKETNGQSGLSGKSSP 361
            |.|:                                                             
 Frog   279 SLPK------------------------------------------------------------- 282

  Fly   362 SLDDSS--HEELTLDEIKKILIVDARSYTSAVTNRARGGGCECIEYYPCAEIEF----MNLGNIH 420
            .:||.:  |:...||.::|.|            :|.           |..|:..    .:|.::.
 Frog   283 DVDDVALQHQRTFLDRVEKTL------------HRP-----------PYEEVRIEDLTASLPSLS 324

  Fly   421 AIRKSFHAVRQ--LCASSPD----DPNWYGQLEKTMWMQHLSGLLGATMTVVHTIEKNGRPVLVH 479
            .::.::...:|  |..:|.|    |..|:..|:.:.||:.:...|...:.|:..:|.:...|::.
 Frog   325 EVQVAYCRFKQLFLIENSTDFWDTDLKWFSSLDTSNWMEIIRQCLRKAVEVIEYLETHKINVVLK 389

  Fly   480 CSDGWDRTPQIVATAQLCLDPYYRTVEGFRVLVEREWLNFGHKFADRSGNGPNSDEVNE-RCPVF 543
            .....|....|.:..|:.:|||.||..||:.||::||:..||.|.||.    |....|| ..|||
 Frog   390 EDTASDFCCIISSLVQIMMDPYCRTKIGFQSLVQKEWVMGGHCFLDRC----NHLRKNENEAPVF 450

  Fly   544 LQWLDLVHQIHRQYPCSFEFSISYLIKLAQHSLSCLFGTFLCNSLRERIENSVFD---------- 598
            |.:||.|.|:.:|||.:|||:.:||..|:......:|.||..||..::..:||.:          
 Frog   451 LLFLDCVWQLVQQYPLAFEFTETYLTVLSDSINIPIFSTFFFNSPWQKDTHSVVEGRQGKQGESL 515

  Fly   599 RTFSVWPFLAE------TMYRNPLY--KHETEKVLWPAHSVRFLYFWSDVYLGSLGNKNGTDLPL 655
            |.::||.:..:      :...||||  |.:.||:...|...:              ::....|||
 Frog   516 RFYTVWDWSVQFEPKAISFLNNPLYVEKAKLEKISRKAARTK--------------HQRQLSLPL 566

  Fly   656 LSNERQSGHNGLMAKTRSSEDLTTNELG---QSTISRRSSDPNLTVESIVTDCFNANSNSMF--- 714
                       ..:||.:......:|.|   ::.:.:|.|.....::.:      .|:...|   
 Frog   567 -----------TQSKTPNKRGFFKDETGPFIKTLLGKRISKLISALDDV------PNNGWAFYES 614

  Fly   715 -------------------DIRSEANNSVSENVQESVKDSKEVE-----LDVTDATEVGPCGRSN 755
                               |||..|...:....:..|.....|.     |:|||..:.......|
 Frog   615 WHRKPVDFHGLILPHLEGPDIRIWAQRLLRWIPEAQVLGGGNVATMQKILEVTDELKCLKKKLEN 679

  Fly   756 NP-IPDFHNDQSTASKRDILEVESQTQRRSSLESSQLIP 793
            || :|.:.:.::          |:..:|:.|:..|.|.|
 Frog   680 NPTLPQYPSKEN----------ETDARRKKSVRRSSLYP 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3632NP_001096996.1 PH-like 35..147 CDD:302622 33/157 (21%)
Myotub-related 221..590 CDD:284109 90/383 (23%)
FYVE_MTMR4 1162..1221 CDD:277272
mtmr12XP_012823020.2 PH-GRAM_MTMR12 25..201 CDD:275418 41/238 (17%)
PTP-MTMR12 259..460 CDD:350442 60/288 (21%)
3-PAP 560..678 CDD:403693 21/134 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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