DRSC/TRiP Functional Genomics Resources

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Protein Alignment caz and TAF15b

DIOPT Version :9

Sequence 1:NP_523365.2 Gene:caz / 32587 FlyBaseID:FBgn0285954 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_568879.3 Gene:TAF15b / 835960 AraportID:AT5G58470 Length:422 Species:Arabidopsis thaliana


Alignment Length:247 Identity:102/247 - (41%)
Similarity:113/247 - (45%) Gaps:81/247 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   214 GGGGGGGGGRGGFGGR--RGGG--GGGGGGGGGGGRFDRGGGGGGGRY---DRGGGGGGGGGGGN 271
            |||||.|||..|:|||  .|||  ||.||.||||||.:|||||||  |   ||||.|.||||   
plant    24 GGGGGYGGGDAGYGGRGASGGGSYGGRGGYGGGGGRGNRGGGGGG--YQGGDRGGRGSGGGG--- 83

  Fly   272 VQPRDGDWKC--NSCNNTNFAWRNECNRC--KTPKGDDEGSSGGGGGGGYGGGGGGGGYDRGNDR 332
               |||||:|  .||.|.|||.|.|||:|  ..|.|...|:: ..|||||..|||      .:||
plant    84 ---RDGDWRCPNPSCGNVNFARRVECNKCGALAPSGTSSGAN-DRGGGGYSRGGG------DSDR 138

  Fly   333 GSGGGGYHNRDR--------GGNSQGGGGGGG----------------------GGG-------- 359
            |.|.||.::..|        ||:..||..|.|                      |.|        
plant   139 GGGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPSYDGSGSYPPPTGY 203

  Fly   360 ---------GYSRFNDNNGGGRGGRGG-----GGGNRRDGGPMRNDGGMRSR 397
                     .||....:.||.|||.|.     ||...|.||   .|||...|
plant   204 GMEAVPPPTSYSGGPPSYGGPRGGYGSDAPSTGGRGGRSGG---YDGGSAPR 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cazNP_523365.2 RRM <118..>205 CDD:223796
RRM_SARFH 122..204 CDD:240978
zf-RanBP 275..304 CDD:279035 18/32 (56%)
RanBP2-type Zn finger 279..298 CDD:275375 12/20 (60%)
TAF15bNP_568879.3 ZnF_RBZ 88..111 CDD:197784 13/22 (59%)
RanBP2-type Zn finger 88..109 CDD:275376 12/20 (60%)
RRM_FET 282..368 CDD:409722
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1995
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002238
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X712
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.770

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