DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prosalpha4 and psmb13a

DIOPT Version :9

Sequence 1:NP_525092.1 Gene:Prosalpha4 / 32584 FlyBaseID:FBgn0004066 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_571752.2 Gene:psmb13a / 64280 ZFINID:ZDB-GENE-001208-2 Length:281 Species:Danio rerio


Alignment Length:245 Identity:48/245 - (19%)
Similarity:88/245 - (35%) Gaps:59/245 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 EAVRKGSTAVGVRGANCVVLGVEKKSVA-QLQEDRKVRKICMLDNHVVMAFAGLTADARIMINRA 89
            :|::.|:|..||...:.||||.:.::.: ::..|:...||..:..::....||..||.       
Zfish    39 KALKTGTTIAGVVFKDGVVLGADTRATSDEVVADKMCAKIHYIAPNIYCCGAGTAADT------- 96

  Fly    90 QVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGRRP-------------------FGISCLI 135
                             |..|..::.....::.::||.|                   .|.:.::
Zfish    97 -----------------EKTTDMLSSNLTIFSMNSGRNPRVVMAVNIIQDMLFRYHGMIGANLIL 144

  Fly   136 GGFDADGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYR-EEEVANEHGAVKLAIRALLE 199
            ||.|..|| ||:...|.|...:....|.|..........|..:: ..::......|..||:|.:.
Zfish   145 GGVDCTGS-HLYTVGPYGSMDKVPYLAMGSGDLAAMGILEDRFKVNMDLEQAKALVSDAIQAGIM 208

  Fly   200 VAQSGQNNLEVAIMENGKPLKMLDTDVITDYVKIIEKEKEEELEKKKQKK 249
            ......||:::.::          |....||::   ..||.....|:|.|
Zfish   209 CDLGSGNNIDLCVI----------TKEGVDYIR---PHKESPYNYKRQAK 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4NP_525092.1 PRK03996 5..231 CDD:235192 42/225 (19%)
proteasome_alpha_type_7 5..213 CDD:239724 40/207 (19%)
psmb13aNP_571752.2 proteasome_beta_type_7 45..233 CDD:239732 41/225 (18%)
Pr_beta_C 241..272 CDD:315191 3/5 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.