DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha4 and psma3

DIOPT Version :9

Sequence 1:NP_525092.1 Gene:Prosalpha4 / 32584 FlyBaseID:FBgn0004066 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_001025358.1 Gene:psma3 / 564370 ZFINID:ZDB-GENE-050913-120 Length:255 Species:Danio rerio


Alignment Length:242 Identity:82/242 - (33%)
Similarity:126/242 - (52%) Gaps:3/242 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 YDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKKSVAQLQEDRKVRKICMLDN 69
            ||.:.:.|||||.:.|||||.:||...|||:|:|..:.||.||||..:::|.|:...::|..:|.
Zfish     8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRIFNIDR 72

  Fly    70 HVVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCL 134
            ||.||.|||.||||.:...|:.|..|.|.|....:.|:::...:|.....||..:..||||.|.:
Zfish    73 HVGMAVAGLLADARSLSEVAREEASSFRSNYGHDIPLKHLADRVAMYVHAYTLYSAVRPFGCSFI 137

  Fly   135 IGGFDADGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLE 199
            :|.:|.|....|:..:||||.|.|...|.|::.:..:...||...::....|  .||...:.:..
Zfish   138 LGSYDEDDGPQLYMVDPSGIAYGYWGCAIGKAKQAAKTEIEKLQMKDMTCRE--LVKEVAKIIYI 200

  Fly   200 VAQSGQNN-LEVAIMENGKPLKMLDTDVITDYVKIIEKEKEEELEKK 245
            |....::. .|:.:...|:..|.....|..|..:..||..:|.||::
Zfish   201 VHDEVKDKAFELELSWVGEVTKGRHELVPKDVKEEAEKYAKESLEEE 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4NP_525092.1 PRK03996 5..231 CDD:235192 77/226 (34%)
proteasome_alpha_type_7 5..213 CDD:239724 73/208 (35%)
psma3NP_001025358.1 proteasome_alpha_type_3 5..217 CDD:239720 73/210 (35%)
PRE1 6..241 CDD:223711 79/234 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1222564at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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