DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha4 and psma3

DIOPT Version :9

Sequence 1:NP_525092.1 Gene:Prosalpha4 / 32584 FlyBaseID:FBgn0004066 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_001011257.1 Gene:psma3 / 496707 XenbaseID:XB-GENE-976787 Length:255 Species:Xenopus tropicalis


Alignment Length:247 Identity:83/247 - (33%)
Similarity:128/247 - (51%) Gaps:23/247 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 YDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKKSVAQLQEDRKVRKICMLDN 69
            ||.:.:.|||||.:.|||||.:||...|||:|:|..:.||.||||..:::|.|:...::|..:|.
 Frog     8 YDLSASTFSPDGRVFQVEYAAKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRIFNVDR 72

  Fly    70 HVVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCL 134
            ||.||.|||.||||.:.:.|:.|..:.|.|....:.|::::..:|.....||..:..||||.|.:
 Frog    73 HVGMAVAGLLADARSLADIAREEASNFRANYGYDIPLKHLSDRVAMYVHAYTLYSAVRPFGCSFM 137

  Fly   135 IGGFDADGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREE----EVANEHGAVKLAIR 195
            :|.::.|..|.|:..:||||.|.|...|.|::.:..:...||...::    :|..|   |...|.
 Frog   138 LGSYNEDDGAQLYMVDPSGISYGYWGCAIGKAKQAAKTEIEKLQMKDMTCRDVVKE---VAKIIY 199

  Fly   196 ALLEVAQSGQNNLE---VAIMENGKPLKMLDTDVITDYVKIIEKEKEEELEK 244
            .:.:..:.....||   |..:.|||.             :|:.|:..||.||
 Frog   200 IVHDEVKDKSFELELSWVGKITNGKH-------------EIVPKDIREEAEK 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4NP_525092.1 PRK03996 5..231 CDD:235192 77/232 (33%)
proteasome_alpha_type_7 5..213 CDD:239724 74/214 (35%)
psma3NP_001011257.1 proteasome_alpha_type_3 5..217 CDD:239720 73/211 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1222564at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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