DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha4 and psma1

DIOPT Version :9

Sequence 1:NP_525092.1 Gene:Prosalpha4 / 32584 FlyBaseID:FBgn0004066 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_001003427.1 Gene:psma1 / 445033 ZFINID:ZDB-GENE-040801-15 Length:262 Species:Danio rerio


Alignment Length:244 Identity:78/244 - (31%)
Similarity:134/244 - (54%) Gaps:7/244 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKKSVAQLQEDRKVRKICML 67
            ::||..||::||.|.:.|:|||.|||::||..||::..:..||...|::.::|...:|  ||..:
Zfish     4 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSHSHAVLVALKRAQSELAAHQK--KILHV 66

  Fly    68 DNHVVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGRRPFGIS 132
            |||:.::.||||||||::.|..:.||...|...:.|:.:..:...|....|..||..||||:|:.
Zfish    67 DNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVG 131

  Fly   133 CLIGGFDADGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRAL 197
            .||.|:| |...|:|||.||..:::.||.:.|..::..|.:.|:........|.:..|:..:|||
Zfish   132 LLIAGYD-DMGPHIFQTCPSANYFDCKAMSIGARSQSARTYLERHMEAFNDCNLNALVQHGLRAL 195

  Fly   198 LEVAQSGQN----NLEVAIMENGKPLKMLDTDVITDYVKIIEKEKEEEL 242
            .|...:.|:    |:.:.|:.......:.|.|.:..:::.:|:..:..:
Zfish   196 RETLPAEQDLTTKNVSIGIVGKDMEFTIYDDDDVATFLQGLEERPQRRV 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4NP_525092.1 PRK03996 5..231 CDD:235192 77/229 (34%)
proteasome_alpha_type_7 5..213 CDD:239724 74/211 (35%)
psma1NP_001003427.1 PRK03996 1..238 CDD:235192 77/236 (33%)
proteasome_alpha_type_1 6..216 CDD:239718 75/212 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1222564at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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