DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha4 and psmb8a

DIOPT Version :9

Sequence 1:NP_525092.1 Gene:Prosalpha4 / 32584 FlyBaseID:FBgn0004066 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_571467.3 Gene:psmb8a / 30666 ZFINID:ZDB-GENE-990415-141 Length:271 Species:Danio rerio


Alignment Length:223 Identity:40/223 - (17%)
Similarity:94/223 - (42%) Gaps:27/223 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 GSTAVGVRGANCVVLGVEKK-SVAQLQEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQ 94
            |:|.:..:..:.|::.|:.: |..:....::..|:..::.:::...:|..||.:........||:
Zfish    67 GTTTLAFKFRHGVIVAVDSRASAGKYIASKEANKVIEINPYLLGTMSGSAADCQYWERLLAKECR 131

  Fly    95 SHRLNVEDPVTLEYITRFIAQLKQKYTQSNGRRPFGIS--CLIGGFDADGSAHLFQTEPSGIFYE 157
            .::|..:..:::...::.::.:...|      |..|:|  .:|.|:|..|.. |:..:.:|....
Zfish   132 LYKLRNKQRISVSAASKLLSNMMLGY------RGMGLSMGSMICGWDKQGPG-LYYVDDNGTRLS 189

  Fly   158 YKANATGRSAKVVREFFEKSYREE---EVANEHGAVKLAIRALLEVAQSGQNNLEVAIMENGKPL 219
            .:..:||..........:..|||:   |.|.|.|...:|.....:....|..|| ..:.|:|   
Zfish   190 GRMFSTGCGNSYAYGVVDSGYREDMTVEEAYELGRRGIAHATHRDAYSGGVVNL-YHMQEDG--- 250

  Fly   220 KMLDTDVITDYVKIIEKEKEEELEKKKQ 247
                      ::|:.:::..|.:.:.|:
Zfish   251 ----------WIKVCKEDVSELIHRYKK 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4NP_525092.1 PRK03996 5..231 CDD:235192 37/205 (18%)
proteasome_alpha_type_7 5..213 CDD:239724 35/187 (19%)
psmb8aNP_571467.3 PTZ00488 37..266 CDD:185666 39/219 (18%)
proteasome_beta_type_5 68..255 CDD:239730 37/207 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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