DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prosalpha4 and pas-6

DIOPT Version :9

Sequence 1:NP_525092.1 Gene:Prosalpha4 / 32584 FlyBaseID:FBgn0004066 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_504472.1 Gene:pas-6 / 178943 WormBaseID:WBGene00003927 Length:260 Species:Caenorhabditis elegans


Alignment Length:226 Identity:74/226 - (32%)
Similarity:119/226 - (52%) Gaps:9/226 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKKSVAQLQEDRKVRKICML 67
            ::||..||::||.|.|.|||||.||:::||..||::.....|:...|::...|...:|  |:..:
 Worm     4 NQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQK--KVYEI 66

  Fly    68 DNHVVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLK-QKYTQSNGRRPFGI 131
            |.|..::.|||.:|.||:....|.||.|.|.:.:..|.::.:...: ||| |..||..||||||:
 Worm    67 DTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESM-QLKLQANTQYYGRRPFGV 130

  Fly   132 SCLIGGFDADGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRA 196
            ..||.|:|.|| ||:.||:||.........:.|..::..|.:.|::....|.:.....:..|:.|
 Worm   131 GILIAGYDKDG-AHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALLA 194

  Fly   197 LLEVAQSGQN----NLEVAIMENGKPLKMLD 223
            |.:...:.:|    |..:.|:....|..:|:
 Worm   195 LRDTLPAEENLNAQNTSIGIVGKDSPFSLLE 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4NP_525092.1 PRK03996 5..231 CDD:235192 74/224 (33%)
proteasome_alpha_type_7 5..213 CDD:239724 71/212 (33%)
pas-6NP_504472.1 PRE1 4..237 CDD:223711 74/226 (33%)
proteasome_alpha_type_1 6..216 CDD:239718 72/213 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1222564at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.