DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha4 and pbs-4

DIOPT Version :9

Sequence 1:NP_525092.1 Gene:Prosalpha4 / 32584 FlyBaseID:FBgn0004066 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_491261.1 Gene:pbs-4 / 171975 WormBaseID:WBGene00003950 Length:202 Species:Caenorhabditis elegans


Alignment Length:220 Identity:45/220 - (20%)
Similarity:83/220 - (37%) Gaps:53/220 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 VGVRGANCVVLGVEKKS------VAQLQED------RKVRKICMLDNHVVMAFAGLTADARIMIN 87
            ||:...|.|:|..:|.:      :|..:.|      :|:..:|:.:...|..|...|.      .
 Worm     8 VGISTENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTK------R 66

  Fly    88 RAQVECQSHRLNVEDPVTLEYITRFIAQ---LKQKYTQSNGRRPFGISCLIGGF-DADGSAHLFQ 148
            ..|:....:...|.......::.|.||:   .:..||         :..||||: |.:..|.|..
 Worm    67 NLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYT---------VDVLIGGYDDKEDKAFLGS 122

  Fly   149 TEPSGIFYEYKANATGRSAKVVREF--------FEKSYREEEVANEHGAVKLAIRALLEVAQSGQ 205
            .       :|.||..|:...:.|.|        .::.|:::  ..|...:.|..:.:.|..:...
 Worm   123 V-------DYLANGLGQQPYLFRGFCGRFCYAIMDREYKKD--MTEAEGLALMNKCIGEAKRRFV 178

  Fly   206 NNL---EVAIMENGKPLKMLDTDVI 227
            .|:   :|.|::. |..:.|| ||:
 Worm   179 ANIPGYKVVIIDK-KGYRKLD-DVL 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4NP_525092.1 PRK03996 5..231 CDD:235192 45/220 (20%)
proteasome_alpha_type_7 5..213 CDD:239724 39/204 (19%)
pbs-4NP_491261.1 proteasome_beta_type_2 4..199 CDD:239727 43/216 (20%)
PRE1 8..199 CDD:223711 43/216 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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