DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha4 and psma6a

DIOPT Version :10

Sequence 1:NP_525092.1 Gene:Prosalpha4 / 32584 FlyBaseID:FBgn0004066 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_705941.2 Gene:psma6a / 171585 ZFINID:ZDB-GENE-020326-1 Length:246 Species:Danio rerio


Alignment Length:241 Identity:66/241 - (27%)
Similarity:127/241 - (52%) Gaps:5/241 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SSRYDRAVTIFSPDGHLLQVEYAQEAVRKGS-TAVGVRGANCVVLGVEKKSVAQLQEDRKVRKIC 65
            |:.:||.:|||||:|.|.|||||.:|:.:|. |:|.|||.:|.|:..::|...:|.:...|..:.
Zfish     6 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVVITQRKVPDKLLDSSTVTHLF 70

  Fly    66 MLDNHVVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGRRPFG 130
            .:..::....:|:|||:|..:.||:.|..:.:......:.::.:.:.||.:.|.|||:...||.|
Zfish    71 RITENIGCVMSGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLG 135

  Fly   131 ISCLIGGFDADGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIR 195
            ...::.|.|.:....:::.:|:|.:..:||.|.|........|.||..:::........|:.||.
Zfish   136 CCMIVVGVDEELGPQVYKCDPAGYYCGFKATAAGVKQTEATSFLEKKIKKKLDWTFDQTVETAIS 200

  Fly   196 ALLEV--AQSGQNNLEVAIMENGKP-LKML-DTDVITDYVKIIEKE 237
            .|..|  .....:.||:.::...:| .::| ::::.|..:.:.|::
Zfish   201 CLSTVLAIDFKPSELEIGVVTTEEPKFRILSESEIDTHLMALTERD 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4NP_525092.1 proteasome_alpha_type_7 5..213 CDD:239724 61/210 (29%)
psma6aNP_705941.2 proteasome_alpha_type_6 8..220 CDD:239723 61/211 (29%)

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