DRSC/TRiP Functional Genomics Resources

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Protein Alignment kat80 and DDB2

DIOPT Version :9

Sequence 1:NP_523363.2 Gene:kat80 / 32581 FlyBaseID:FBgn0040207 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_200684.2 Gene:DDB2 / 835990 AraportID:AT5G58760 Length:557 Species:Arabidopsis thaliana


Alignment Length:370 Identity:86/370 - (23%)
Similarity:135/370 - (36%) Gaps:121/370 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 IKAHDSRVTSLDLGET-GRVLVTGGEDRNVNLWAIG---QNECFMSLTGHNRSIDCVRFA-YKDN 73
            |:.|..|||.|:...| ..:|::|.:...:.:|..|   :...:.::  |:..::.:||: ..|:
plant   167 IRYHSRRVTCLEFHPTKNNILLSGDKKGQIGVWDFGKVYEKNVYGNI--HSVQVNNMRFSPTNDD 229

  Fly    74 FVYSADDIGII------------------------RRW------DLNSQK--IYSTLNG---HMK 103
            .||||...|.|                        ..|      |:||:|  :.:..|.   ||.
plant   230 MVYSASSDGTIGYTDLETGTSSTLLNLNPDGWQGANSWKMLYGMDINSEKGVVLAADNFGFLHMI 294

  Fly   104 SVRT-------------------LDFNP-SGEYVVSGSNDTTVRLWDVQNENNCIKVCRGHMSH- 147
            ..||                   ||.|| ..|.::|..||...|:||::....  |.....::| 
plant   295 DHRTNNSTGEPILIHKQGSKVCGLDCNPVQPELLLSCGNDHFARIWDMRKLQP--KASLHDLAHK 357

  Fly   148 --VNSVKFSP-DGLWIASAGLEGSILIWDI------RKSKQIME----------FIA--DPPVTA 191
              |||..||| .|..|.:...:..|.|||.      ..|::|:.          |.|  ||..|:
plant   358 RVVNSAYFSPSSGTKILTTCQDNRIRIWDSIFGNLDLPSREIVHSNDFNRHLTPFKAEWDPKDTS 422

  Fly   192 ITCVQFHPFEFLLAAGR-----VDGT----VSIYDLEHQQLVSQTTHFYGQAIRCIT----FSDN 243
                     |.|:..||     .:||    :...|..:.|||::.   ....|..||    ....
plant   423 ---------ESLIVIGRYISENYNGTALHPIDFIDASNGQLVAEV---MDPNITTITPVNKLHPR 475

  Fly   244 GECLFVGSSSGISVIGWEPDRELDHIKSTWSSLADMKVVNNKLIC 288
            .:.|..|||..:.:  |.|....:.::..    .|.|::    ||
plant   476 DDVLASGSSRSLFI--WRPQDNTEMVEEK----KDKKII----IC 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kat80NP_523363.2 Katanin_con80 667..803 CDD:290636
WD40 <4..330 CDD:225201 86/370 (23%)
WD40 14..260 CDD:238121 80/340 (24%)
WD40 repeat 22..58 CDD:293791 7/39 (18%)
WD40 repeat 63..99 CDD:293791 14/68 (21%)
WD40 repeat 106..142 CDD:293791 14/55 (25%)
WD40 repeat 148..184 CDD:293791 14/52 (27%)
WD40 repeat 192..228 CDD:293791 10/44 (23%)
WD40 repeat 285..310 CDD:293791 2/4 (50%)
DDB2NP_200684.2 AIR1 <75..>120 CDD:227414
WD40 <165..508 CDD:225201 84/362 (23%)
WD40 repeat 174..213 CDD:293791 8/38 (21%)
WD40 repeat 219..265 CDD:293791 9/45 (20%)
WD40 repeat 270..308 CDD:293791 9/37 (24%)
WD40 repeat 316..353 CDD:293791 12/38 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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