DRSC/TRiP Functional Genomics Resources

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Protein Alignment kat80 and pafah1b1a

DIOPT Version :9

Sequence 1:NP_523363.2 Gene:kat80 / 32581 FlyBaseID:FBgn0040207 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_958502.1 Gene:pafah1b1a / 394246 ZFINID:ZDB-GENE-040116-2 Length:410 Species:Danio rerio


Alignment Length:226 Identity:57/226 - (25%)
Similarity:106/226 - (46%) Gaps:21/226 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 YDIKAHDSRVTSLDLGETGRVLVTGGEDRNVNLWAIGQNECFMSLTGHNRSIDCVRFAYKDNFVY 76
            |.:..|.|.||.:.......|:|:..||..:.:|.....:...:|.||..|:..:.|.:....:.
Zfish   102 YALSGHRSPVTRVIFHPVFSVIVSASEDATIKVWDHETGDFERTLKGHTDSVQDISFDHTGKLLA 166

  Fly    77 SADDIGIIRRWDLNSQKIYSTLNGHMKSVRTLDFNPSGEYVVSGSNDTTVRLWDVQNENNCIKVC 141
            |......|:.||....:...|::||..:|.::...|:|:::||.|.|.|:::|:|.. ..|:|..
Zfish   167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVAT-GYCVKTF 230

  Fly   142 RGHMSHVNSVKFSPDGLWIASAGLEGSILIW---------DIRKSKQIMEFIADPPVTAITCV-- 195
            .||...|..|:.:.||..|||:..:.::.:|         ::|:.:.::|.|:..|.:|...:  
Zfish   231 TGHREWVRMVRPNQDGTLIASSSNDQTVRVWVVATKECKAELREHEHVVECISWAPESAHPTILE 295

  Fly   196 --------QFHPFEFLLAAGRVDGTVSIYDL 218
                    ...|..|||:..| |.|:.::|:
Zfish   296 ATGSETKKSGKPGPFLLSGSR-DKTIKMWDV 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kat80NP_523363.2 Katanin_con80 667..803 CDD:290636
WD40 <4..330 CDD:225201 57/226 (25%)
WD40 14..260 CDD:238121 56/224 (25%)
WD40 repeat 22..58 CDD:293791 7/35 (20%)
WD40 repeat 63..99 CDD:293791 6/35 (17%)
WD40 repeat 106..142 CDD:293791 11/35 (31%)
WD40 repeat 148..184 CDD:293791 10/44 (23%)
WD40 repeat 192..228 CDD:293791 8/37 (22%)
WD40 repeat 285..310 CDD:293791
pafah1b1aNP_958502.1 LisH 9..35 CDD:285685
WD40 <100..410 CDD:225201 57/226 (25%)
WD40 104..408 CDD:238121 56/224 (25%)
WD 1 106..145 9/38 (24%)
WD40 repeat 111..148 CDD:293791 8/36 (22%)
WD 2 148..187 8/38 (21%)
WD40 repeat 154..190 CDD:293791 6/35 (17%)
WD 3 190..229 13/39 (33%)
WD40 repeat 195..231 CDD:293791 12/36 (33%)
WD 4 232..271 10/38 (26%)
WD40 repeat 238..273 CDD:293791 7/34 (21%)
WD 5 274..333 12/53 (23%)
WD40 repeat 279..335 CDD:293791 12/48 (25%)
WD 6 336..375
WD40 repeat 341..377 CDD:293791
WD 7 378..410
WD40 repeat 383..407 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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