DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr18 and lrit3a

DIOPT Version :9

Sequence 1:NP_573102.1 Gene:dpr18 / 32572 FlyBaseID:FBgn0030723 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_001122166.1 Gene:lrit3a / 558559 ZFINID:ZDB-GENE-080723-63 Length:636 Species:Danio rerio


Alignment Length:546 Identity:110/546 - (20%)
Similarity:177/546 - (32%) Gaps:186/546 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LSPASNAAQTLPLSYNSQ---TSLSLLRLLTIALVIGSQV----QVLYTTSVETKSPSASEQSRN 67
            :.|::|.:|...|.....   ....:.:|:.::.:.|..|    |||..:..|..|         
Zfish   182 IQPSANTSQKTVLGLQDNPWYCDCRISKLIELSKMAGIPVVLMDQVLTCSGPEHLS--------- 237

  Fly    68 GENRSLLFDDYNK---TKSTLSTADYLSATRATLYAFSSQDQDEDHSQMPIEAS-----NAPHSP 124
                .:||.....   .|.|:.|    |||:.|               .|:.::     :|...|
Zfish   238 ----GVLFQRAELDQCVKPTVMT----SATKIT---------------SPLGSNVLLRCDANGFP 279

  Fly   125 IPT--------KMSRGKIPMETPG-SMEFSSNSL-------------PIKNV-GTTDQLTTVTM- 165
            .||        .:....:..|:|| .:.:|..||             ..||| |..:...|::: 
Zfish   280 TPTLLWTTADGSVVNNTVVQESPGEGVRWSILSLHSIVFKDAGDYRCKAKNVAGNAEAYITLSVD 344

  Fly   166 ---PTTAFASLKVDRSTMKQPIDSTRTRNHWTASGFARVTERPRSKHHHEHHWGPFFEEPINSAT 227
               |||.|..:.:    .|||.|...|            |..|...        |.|       |
Zfish   345 GVQPTTPFPPINI----TKQPEDQPTT------------TFTPTKM--------PLF-------T 378

  Fly   228 SGDNLVSAVHLFTEAVLNCRVGMLKDKTVMWVRRTAEKVSLLTVGNVTYS---GDPRIRVKFQYP 289
            |    :|.:.:.|..|:.....:...|            |.:..|.|..|   ||...:|  |..
Zfish   379 S----LSPITITTRPVMTTMPPLTTRK------------SPIPGGGVQRSPPAGDKPAKV--QQS 425

  Fly   290 NNWRLLINPT---------QTEDAGVYMCQVSTHPPRVFTTNLTVLEPPLRIIDEHE---RDVGD 342
            .|.:..|..:         :|.:..|.:......|.   .|.|||:..|....|:.|   .:||.
Zfish   426 KNGKGSIKKSDIRDIEVVEETTETAVLLWSAEGLPS---DTPLTVVYFPYDAKDDKETVDTEVGQ 487

  Fly   343 ----RYYKSGSTVDLQCQISRSFFQKE----------------RQTILKSTDSANDAVQKLINET 387
                ..|...:.|...|.:::|..:::                :..::.|..:...||..::...
Zfish   488 GKLLLEYLMPNQVYTVCLVTKSSGKEQCVDFSTLEIGGEEGQNKVLMIASAIACAIAVPLIVVLL 552

  Fly   388 TSELNLIGNVNQTQHKFSGQDLEK-YFTKFITWAKDEEPLQGMTNRRLSVSDVW----------- 440
            ...|.|....|.:::....:||.| .:.||.|....:..|.|..|      |:|           
Zfish   553 YKILCLYCKGNSSRNNGPDEDLSKDTYVKFETLTMKQRTLNGQAN------DLWARRQTQESERM 611

  Fly   441 -LTSRISIGDAKL---SDS--GNYSC 460
             |.||.|| |:::   |||  ..|.|
Zfish   612 LLCSRSSI-DSQMTYKSDSSRSEYLC 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr18NP_573102.1 IG_like 242..325 CDD:214653 17/94 (18%)
Ig <258..326 CDD:299845 16/79 (20%)
IGc2 <417..461 CDD:197706 17/61 (28%)
lrit3aNP_001122166.1 LRR_8 81..141 CDD:290566
leucine-rich repeat 83..106 CDD:275378
LRR_4 107..145 CDD:289563
leucine-rich repeat 107..130 CDD:275378
LRR_8 129..>171 CDD:290566
LRR_4 129..170 CDD:289563
leucine-rich repeat 131..154 CDD:275378
leucine-rich repeat 155..168 CDD:275378
TPKR_C2 199..249 CDD:301599 10/62 (16%)
Ig 252..343 CDD:299845 22/109 (20%)
IG_like 261..343 CDD:214653 17/96 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.