DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr18 and ncam1a

DIOPT Version :9

Sequence 1:NP_573102.1 Gene:dpr18 / 32572 FlyBaseID:FBgn0030723 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_009293555.1 Gene:ncam1a / 30447 ZFINID:ZDB-GENE-990415-31 Length:1010 Species:Danio rerio


Alignment Length:472 Identity:87/472 - (18%)
Similarity:145/472 - (30%) Gaps:149/472 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 YAFSSQDQDE-DHSQMPIEASNAPHSPIPTKMSRGKIPMETPGSME-FSSNSLPIKNVGTTDQLT 161
            ||.|.|:.:| |.:.:..:..::|...|..:..:.:|..||...:: .|:|.|.|:.:..||: .
Zfish   119 YAPSPQEFNEGDDADIICDVISSPPPTIIWRYKKMRIQPETDVRLKVLSNNHLQIRGIKKTDE-G 182

  Fly   162 TVTMPTTAFASLKVDRSTMK---QPIDSTRTRNHWTASGFARVTERPRSKHHHEHHWGPFFEEPI 223
            ..|......|..::|...:|   ..:.|.||          |.||.                   
Zfish   183 DYTCEGRIMARGEIDLRVIKVIVNVLPSIRT----------RYTEL------------------- 218

  Fly   224 NSATSGDNLVSAVHLFTEAV-LNCRVGMLKDKTVMWVRRTAEKVSLLTVGNVTYSGDPRIRVKFQ 287
             :||:..|         :|| |.|......:.||.|.|           ||.....|.:..:.  
Zfish   219 -NATADIN---------QAVTLACHADGYPEPTVKWAR-----------GNTELESDEKYSLN-- 260

  Fly   288 YPNNWRLLINPTQTEDAGVYMC---------------QVSTHPPRVFTTNLTV--LEPPLRIIDE 335
             .:...|.|......|.|.|.|               .|...|...|..|.|.  ||..:.:..|
Zfish   261 -EDGSELTIKDVNKLDEGDYKCIARNKAGERSEEVTLNVFVQPKITFLENQTASELEEQITLTCE 324

  Fly   336 HERDVGDRYYKSGSTVDLQCQISRSFFQKERQ---------------TILKSTDSANDAVQKLIN 385
            ...|         .|.::.....|..|.:..|               .:::|....:....|.:.
Zfish   325 ATGD---------PTPNIIWSFGRRVFTENEQASWTRPEKHKSLDGNVVVRSDARVSSLTLKYVQ 380

  Fly   386 ETTSELNLIGNVNQTQHKFSGQDLE------KYFTKF---------------------------I 417
            .|.:     |....|.....|||::      :|..|.                           :
Zfish   381 FTDA-----GQYLCTARNSIGQDIQSMYLEVRYAPKIQGPQAVFTWEGNPANITCEALAHPGASV 440

  Fly   418 TWAKDEEPLQGMTNRRLSVSDVWLTSRISIGDAKLSDSGNYSCS----LGRLFTVIVQVQVLTGE 478
            .|.:|.:.|.......:.:.:....|.:.:.....:|.|:|:|:    :|......:.||   .:
Zfish   441 LWFRDGQQLPSANTTNVKIYNTPTVSFLEVTPDSQNDFGSYNCTATNVIGTESKEFILVQ---AD 502

  Fly   479 LPAAVQHNIGSRTEIYS 495
            :|:|...   .|.|.||
Zfish   503 VPSAPSI---ERVEPYS 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr18NP_573102.1 IG_like 242..325 CDD:214653 21/98 (21%)
Ig <258..326 CDD:299845 16/84 (19%)
IGc2 <417..461 CDD:197706 7/43 (16%)
ncam1aXP_009293555.1 Ig 20..112 CDD:299845
I-set 21..111 CDD:254352
IG_like 121..200 CDD:214653 18/79 (23%)
IGc2 128..189 CDD:197706 14/61 (23%)
Ig 208..301 CDD:299845 27/145 (19%)
IG_like 219..298 CDD:214653 20/101 (20%)
Ig 300..406 CDD:299845 20/119 (17%)
IG_like 308..406 CDD:214653 18/111 (16%)
ig 413..498 CDD:278476 9/84 (11%)
IG_like 415..498 CDD:214653 9/82 (11%)
fn3 505..589 CDD:278470 5/15 (33%)
FN3 624..715 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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