DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr18 and Lsamp

DIOPT Version :9

Sequence 1:NP_573102.1 Gene:dpr18 / 32572 FlyBaseID:FBgn0030723 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_038944182.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:308 Identity:68/308 - (22%)
Similarity:105/308 - (34%) Gaps:79/308 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   230 DNLVSAVHLFTEAVLNCRVGMLKDKT--VMWVRRTAEKVSLLTVGNVTYSGDPRIRVKFQYPNNW 292
            ||:  .|.....|:|.|   :::||.  |.|:.|:    .::..|:..:|.|||:.::.::...:
  Rat    56 DNI--TVRQGDTAILRC---VVEDKNSKVAWLNRS----GIIFAGHDKWSLDPRVELEKRHALEY 111

  Fly   293 RLLINPTQTEDAGVYMCQVST-HPPRVFTTNLTVLEPPLRIIDEHERDVGDRYYKSGSTVDLQCQ 356
            .|.|......|.|.|.|.|.| |.|:.....|.|..||.  |.....||   ....||.|.|.|.
  Rat   112 SLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPK--ISNISSDV---TVNEGSNVTLVCM 171

  Fly   357 ----------------ISRSF-FQKERQTILKSTDSANDAVQ-KLINETTSELNLIGNVNQ---- 399
                            :.|.| .::|...||..|...:...: |..||.:|     .:|.|    
  Rat   172 ANGRPEPVITWRHLTPLGREFEGEEEYLEILGITREQSGKYECKAANEVSS-----ADVKQVKVT 231

  Fly   400 -------TQHKFS------------------GQDLEKYFTKFITWAKDEEPLQGMTNRRLSVSDV 439
                   |:.|.:                  ..|.|        |.:|:..:.....  |.:...
  Rat   232 VNYPPTITESKSNEATTGRQASLKCEASAVPAPDFE--------WYRDDTRINSANG--LEIKST 286

  Fly   440 WLTSRISIGDAKLSDSGNYSCSLGRLFTVIVQVQVLTGELPAAVQHNI 487
            ...|.:::.:......|||:|.......|.....||...:...|.|.|
  Rat   287 EGQSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVLFKRVLPTVPHPI 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr18NP_573102.1 IG_like 242..325 CDD:214653 24/85 (28%)
Ig <258..326 CDD:299845 18/68 (26%)
IGc2 <417..461 CDD:197706 7/43 (16%)
LsampXP_038944182.1 Ig 55..145 CDD:416386 27/97 (28%)
FR1 55..71 CDD:409353 6/19 (32%)
Ig strand A' 56..62 CDD:409353 3/7 (43%)
Ig strand B 64..72 CDD:409353 3/10 (30%)
CDR1 72..76 CDD:409353 1/3 (33%)
FR2 77..84 CDD:409353 2/6 (33%)
Ig strand C 77..83 CDD:409353 2/5 (40%)
CDR2 85..95 CDD:409353 1/13 (8%)
Ig strand C' 87..90 CDD:409353 0/2 (0%)
Ig strand C' 92..95 CDD:409353 0/2 (0%)
FR3 96..131 CDD:409353 10/34 (29%)
Ig strand D 100..107 CDD:409353 1/6 (17%)
Ig strand E 110..116 CDD:409353 1/5 (20%)
Ig strand F 123..131 CDD:409353 3/7 (43%)
CDR3 132..136 CDD:409353 2/3 (67%)
Ig strand G 136..145 CDD:409353 2/8 (25%)
FR4 138..145 CDD:409353 1/6 (17%)
Ig_3 148..218 CDD:404760 17/74 (23%)
Ig strand A' 155..160 CDD:409353 2/7 (29%)
Ig strand B 166..173 CDD:409353 3/6 (50%)
Ig strand C 179..184 CDD:409353 0/4 (0%)
Ig strand D 190..193 CDD:409353 1/2 (50%)
Ig strand E 197..203 CDD:409353 2/5 (40%)
Ig strand F 210..217 CDD:409353 1/6 (17%)
Ig strand G 224..232 CDD:409353 2/7 (29%)
Ig_3 235..311 CDD:404760 12/85 (14%)
Ig strand B 252..256 CDD:409353 0/3 (0%)
Ig strand C 265..269 CDD:409353 2/11 (18%)
Ig strand E 290..294 CDD:409353 1/3 (33%)
Ig strand F 304..309 CDD:409353 3/4 (75%)
Ig strand G 318..321 CDD:409353 0/2 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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