DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr18 and lsamp

DIOPT Version :9

Sequence 1:NP_573102.1 Gene:dpr18 / 32572 FlyBaseID:FBgn0030723 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_031751462.1 Gene:lsamp / 100124984 XenbaseID:XB-GENE-5759171 Length:368 Species:Xenopus tropicalis


Alignment Length:363 Identity:71/363 - (19%)
Similarity:128/363 - (35%) Gaps:95/363 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   222 PINSA---TSGDNLVSAVHLFTEAVLNCRVGMLKDKT--VMWVRRTAEKVSLLTVGNVTYSGDPR 281
            |:.|.   .|.||:  .|.....|:|.|   .::|::  |.|:.|:    .::..|:..:|.|||
 Frog    28 PVRSGDFNRSTDNI--TVRQGDTAILRC---FVEDRSSRVAWLNRS----GIIFAGDDKWSLDPR 83

  Fly   282 IRVKFQYPNNWRLLINPTQTEDAGVYMCQVSTHPPRVFTTNLTVLEPPLRIIDEHERDVGDRYYK 346
            :.::.:....:.|.|......|.|.|.|.|.|......|....:::.|.:|    .....|....
 Frog    84 VELEKRSLLEYSLRIQKVDVSDEGPYTCSVQTKQHTKTTQVYLIVQVPPKI----SNISADITVN 144

  Fly   347 SGSTVDLQC---------------------QISRSFFQKER----QTILKSTD------SANDAV 380
            .||.|.|.|                     ..:|.|..:|.    |.|.:...      :||:..
 Frog   145 EGSNVTLMCIAYGRPEPMITWRHLTPTAGTSPARDFEGEEEFLEIQGITREQSGRYECKAANEVA 209

  Fly   381 QKLINETTSELNL--IGNVNQTQHKFSGQ--------------DLEKYFTKFITWAKDEEPLQGM 429
            ...:.:....:|.  |...:::....:|:              |.|        |.||:...:.:
 Frog   210 SADVKQVRVTVNYPPIITESKSNEATTGKQAILRCEASAVPAPDFE--------WYKDDTRSRRI 266

  Fly   430 TNRR-LSVSDVWLTSRISIGDAKLSDSGNYSC----SLGRLFTVIVQVQVLTGELPAAV------ 483
            .:.: |.:.:....|.:.:.:......|||:|    .||...|.:...:.::...|.:.      
 Frog   267 NSAQGLEIRNTGSRSVLMVANVTEEHYGNYTCVAANKLGITNTSLYLYKRVSPTKPMSASERGSN 331

  Fly   484 ---QHNIGSRTEI-------YSLAMLGHLLVLIFLFTC 511
               |:.:|..|.|       .||.::.:||..:|. ||
 Frog   332 VHYQYKVGPGTPIDSATSLAASLWLMANLLFCLFC-TC 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr18NP_573102.1 IG_like 242..325 CDD:214653 21/84 (25%)
Ig <258..326 CDD:299845 16/67 (24%)
IGc2 <417..461 CDD:197706 9/48 (19%)
lsampXP_031751462.1 Ig 38..128 CDD:416386 24/98 (24%)
FR1 38..54 CDD:409353 6/20 (30%)
Ig strand A' 39..45 CDD:409353 3/7 (43%)
Ig strand B 47..55 CDD:409353 3/10 (30%)
CDR1 55..59 CDD:409353 1/3 (33%)
FR2 60..67 CDD:409353 2/6 (33%)
Ig strand C 60..66 CDD:409353 2/5 (40%)
CDR2 68..78 CDD:409353 1/13 (8%)
Ig strand C' 70..73 CDD:409353 0/2 (0%)
Ig strand C' 75..78 CDD:409353 0/2 (0%)
FR3 79..114 CDD:409353 10/34 (29%)
Ig strand D 83..90 CDD:409353 1/6 (17%)
Ig strand E 93..99 CDD:409353 1/5 (20%)
Ig strand F 106..114 CDD:409353 3/7 (43%)
CDR3 115..119 CDD:409353 1/3 (33%)
Ig strand G 119..128 CDD:409353 1/8 (13%)
FR4 121..128 CDD:409353 1/6 (17%)
Ig_3 131..206 CDD:404760 13/78 (17%)
Ig strand A' 138..143 CDD:409353 1/4 (25%)
Ig strand B 149..156 CDD:409353 3/6 (50%)
Ig strand C 162..167 CDD:409353 0/4 (0%)
Ig strand C' 173..175 CDD:409353 0/1 (0%)
Ig strand E 185..191 CDD:409353 0/5 (0%)
Ig strand F 198..205 CDD:409353 0/6 (0%)
Ig strand G 212..220 CDD:409353 0/7 (0%)
Ig_3 223..302 CDD:404760 13/86 (15%)
putative Ig strand A 224..230 CDD:409353 1/5 (20%)
Ig strand B 240..244 CDD:409353 0/3 (0%)
Ig strand C 253..257 CDD:409353 2/11 (18%)
Ig strand E 281..285 CDD:409353 1/3 (33%)
Ig strand F 295..300 CDD:409353 3/4 (75%)
Ig strand G 308..311 CDD:409353 1/2 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I11916
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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