DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vap and rasal2

DIOPT Version :9

Sequence 1:NP_001285314.1 Gene:vap / 32569 FlyBaseID:FBgn0003969 Length:954 Species:Drosophila melanogaster
Sequence 2:XP_005171378.1 Gene:rasal2 / 793730 ZFINID:ZDB-GENE-070912-180 Length:1432 Species:Danio rerio


Alignment Length:590 Identity:138/590 - (23%)
Similarity:255/590 - (43%) Gaps:104/590 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   376 KKIKGIKHHGHLNKKSDKTTKWKQ---------------------LYFALINDGSETQLCFYDNP 419
            |::||.........|.|:.|.::.                     .:.:|::.||..:       
Zfish   304 KRLKGSIKRTKSQTKLDRNTSFRLPSLRPTENDRSRGLPKLKESCSHESLLSPGSAVE------- 361

  Fly   420 KKTKPKGLIDLSC---AYLYQCHDSLWERPYCFQIVERALPCLATVTYLCAPSQESYVEWINSLK 481
                   .:|||.   .|:...|.|:..:.:||::....    .:..:.|:.:.|. .:|:.:||
Zfish   362 -------ALDLSMEEDVYIKPLHSSILGQDFCFEVAYSG----GSKCFSCSSAAER-DKWMENLK 414

  Fly   482 AQCDSQLSRAQKKVSRLRELRCLNLHVLEAHRLPFKLVPHPYCSISLNQVKVGKTRVKIAPEPV- 545
            ..........::..:.||      |.::||..||.|  ...:|.:.|:.:...:|..|...:.: 
Zfish   415 RTVQPNKDNCRRAENVLR------LWIIEAKDLPPK--KKYFCELCLDDMLYARTTSKTRSDCLF 471

  Fly   546 WEEEFVLDDVPPDVVSLTITLI----SRGKRGKDSEVAELTIDLSSLKNGQETEGWYQLTGMTP- 605
            |.|.|....: |.:.|:||.:.    .:.|:.|::.|..:.|.:..:...|..|.||.::  || 
Zfish   472 WGEHFEFSGL-PSMKSITIHIYRDVDKKKKKDKNNYVGLVNIPVHGVMGRQFVEKWYPVS--TPT 533

  Fly   606 ----MGEWGSLRLRMRYLDDLIMPCEEYSPLQQLLLESELYAVKALAELCH-NDRVPLATALLRV 665
                .|...|:|::.|:....|:|.|:|....:.:..:.......|..:.. .::..:|:||:.:
Zfish   534 TSKAKGGGPSIRIKSRFQTISILPMEQYKEFAEFVTNNYTMLCSVLEPVISVKNKEEMASALVHI 598

  Fly   666 FRQEKRETELIRMLCQAEVTR-ENETTTLFRGASLATTLMDLYMRTECSGFLQSAVSETVQRILE 729
            .:...|..:.:..|..:||.| .:....:||..:|||..::.|::.....:|..|:.|.::.:.|
Zfish   599 LQSTGRAKDFLTDLVMSEVDRCADHDVLIFRENTLATKAIEEYLKLVGQKYLHDALGEFIKALYE 663

  Fly   730 SKQSAELNPTKMDVNDDACTNAEF------LLQILDLVTQSIFTSPDACPRNVRFICSCLQKAVM 788
            |.::.|::.:|       ||:.|.      |....:|....|..|....||.:        |.|.
Zfish   664 SDENCEVDQSK-------CTSNELPEHQSNLKMCCELAFCKIINSYCVFPREL--------KEVF 713

  Fly   789 AKWPTE------RLVRTRVVSGFIFLRLLCPALLNPRQFGLVSETPPMAATRSLVMVAKCLQNLA 847
            |.|..:      :.:..|::|..:|||.||||:::|..|||:.|.|....:|:|.::||.:||||
Zfish   714 ASWKQQCHARGKQDISQRLISASLFLRFLCPAIMSPSLFGLMQEYPDDRTSRTLTLIAKVIQNLA 778

  Fly   848 NLIEFGGKEQYMEVVNPFILKNKERMIVFLDQLSSVNDPNQPLGM--FVEQSTNLNSQDTGRELA 910
            |..:||.||:||..:|.|:......|..||.::|::...:...|.  ::         |.||||:
Zfish   779 NFAKFGNKEEYMAFMNDFLEHEWAGMTRFLLEISNLETISNTPGFEGYI---------DLGRELS 834

  Fly   911 TLHHI 915
            .||.:
Zfish   835 VLHSL 839

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vapNP_001285314.1 SH2_Nterm_RasGAP 64..166 CDD:198216
SH3_RasGAP 183..241 CDD:212722
SH2_Cterm_RasGAP 252..326 CDD:198217
PH_RASA1 379..484 CDD:270080 21/128 (16%)
C2_Ras_p21A1 499..622 CDD:176045 32/132 (24%)
RasGAP 620..954 CDD:413381 83/312 (27%)
rasal2XP_005171378.1 PH-like 293..477 CDD:302622 36/199 (18%)
C2_SynGAP_like 419..558 CDD:175980 34/149 (23%)
RasGAP 542..877 CDD:214617 86/322 (27%)
RasGAP_DAB2IP 549..879 CDD:213338 84/315 (27%)
DUF3498 869..1393 CDD:288827
SPEC <1265..1403 CDD:295325
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3508
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D44624at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.