DRSC/TRiP Functional Genomics Resources

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Protein Alignment exd and CUP9

DIOPT Version :10

Sequence 1:NP_523360.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_015148.1 Gene:CUP9 / 855926 SGDID:S000006098 Length:306 Species:Saccharomyces cerevisiae


Alignment Length:281 Identity:69/281 - (24%)
Similarity:110/281 - (39%) Gaps:83/281 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 QNAGSENEVRKQKDIGEILQQIMSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIR 93
            ||..|:| |..|..:..|.....||.::|:.|               ..||.: |.....:.|  
Yeast     8 QNRNSKN-VDNQVSLPPIQVLFNSIEKRSMPE---------------LAFSNI-EYSHGNLRS-- 53

  Fly    94 NTQEEEPPDPQLMRLDNMLIAEGVAGPEKGGGGAA-----AASAAAASQGGSLSID-----GADN 148
            :|:|:..|.|.|:...:     .:|.|....||.:     .||....|:..|.::|     |:..
Yeast    54 STEEQNYPAPVLLPQHH-----SIAYPAINSGGTSTTATPTASTVETSKTSSSAMDTQSQYGSSK 113

  Fly   149 AIEHSDYRA----KLAQIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQII 209
            ..:.:...|    |.|.|.:|.::|.:...|....|:..|      :|::|              
Yeast   114 KSKSASDDAKPCYKSAPIYEIINKEKDAGAQYNRPFSDFV------ESKSR-------------- 158

  Fly   210 HKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEEL 274
                      .||::               .:|.|..|:..:|||.:..:||:||||:::.|.||
Yeast   159 ----------RKQNS---------------GRRSNLPKETVQILNTWLLNHLNNPYPTQQEKREL 198

  Fly   275 ARKCGITVSQVSNWFGNKRIR 295
            ..|.|:|..|:||||.|.|.|
Yeast   199 LIKTGLTKIQLSNWFINVRRR 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_523360.1 PBC 42..237 CDD:461052 37/208 (18%)
homeodomain 239..299 CDD:238039 26/57 (46%)
CUP9NP_015148.1 Homeobox_KN 181..219 CDD:428673 19/37 (51%)

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