DRSC/TRiP Functional Genomics Resources

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Protein Alignment exd and STM

DIOPT Version :10

Sequence 1:NP_523360.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_176426.1 Gene:STM / 842534 AraportID:AT1G62360 Length:382 Species:Arabidopsis thaliana


Alignment Length:352 Identity:78/352 - (22%)
Similarity:130/352 - (36%) Gaps:127/352 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 QNAGSENEVRKQKDIGEIL----QQIMSISEQSLDEAQARKHTL-------NCHRMKPALFSVLC 82
            |:.|.:::.::|:..|...    ||..|:..|||...|..|:.:       :|   .|| :| |.
plant    38 QHHGHDHQHQQQEHDGYAYQSHHQQSSSLFLQSLAPPQGTKNKVASSSSPSSC---APA-YS-LM 97

  Fly    83 EIKEKTVL--------------SIR-----------------NTQEEEPPDPQLMRLDNMLIAEG 116
            ||....::              |::                 |.|:...|...:.||:.      
plant    98 EIHHNEIVAGGINPCSSSSSSASVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEE------ 156

  Fly   117 VAGPEKGGGGAAAASAAAASQG--GSLSIDGADNAIEHSDYRAKLAQIRQIYHQELEKYEQACNE 179
                     ..::|:|||||.|  |.|   |.|..::         |..:.|.:.|.||||..::
plant   157 ---------ACSSAAAAAASMGPTGCL---GEDPGLD---------QFMEAYCEMLVKYEQELSK 200

  Fly   180 -------FTTHVMNLLREQSRTRP-----------------------------ITPKEIERMV-- 206
                   |...|....:..|.:.|                             :.|:..:|.:  
plant   201 PFKEAMVFLQRVECQFKSLSLSSPSSFSGYGETAIDRNNNGSSEEEVDMNNEFVDPQAEDRELKG 265

  Fly   207 QIIHKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAK 271
            |:: :|:|.....|||...:            :||:....|:|.:.|.:::..|...|||||:.|
plant   266 QLL-RKYSGYLGSLKQEFMK------------KRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQK 317

  Fly   272 EELARKCGITVSQVSNWFGNKRIRYKK 298
            ..||...|:...|::|||.|:|.|:.|
plant   318 LALAESTGLDQKQINNWFINQRKRHWK 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_523360.1 PBC 42..237 CDD:461052 52/276 (19%)
homeodomain 239..299 CDD:238039 23/60 (38%)
STMNP_176426.1 KNOX1 121..156 CDD:461051 5/34 (15%)
KNOX2 173..216 CDD:427506 12/54 (22%)
ELK 262..283 CDD:427504 6/21 (29%)
Homeobox_KN 303..341 CDD:428673 16/37 (43%)

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