DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment exd and KNAT3

DIOPT Version :9

Sequence 1:NP_001259592.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_197904.1 Gene:KNAT3 / 832593 AraportID:AT5G25220 Length:431 Species:Arabidopsis thaliana


Alignment Length:310 Identity:71/310 - (22%)
Similarity:116/310 - (37%) Gaps:83/310 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 DGQNAGSENEVRKQKDIGEILQQIMSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLS 91
            |.|.|.|::.|.|...:|...|.::. .::.||:.......|            ||..||:....
plant   193 DAQLAQSQHVVAKYSALGAAAQGLVG-DDKELDQFMTHYVLL------------LCSFKEQLQQH 244

  Fly    92 IRNTQEEEPPDPQLM---RLDNMLIAEGVAGPEKGGGGAAAASAAAASQGGSLSIDGADNAIEHS 153
            :|....|     .:|   .::..|  :.:.|...|.|           .|.::|.|         
plant   245 VRVHAME-----AVMACWEIEQSL--QSLTGVSPGEG-----------MGATMSDD--------- 282

  Fly   154 DYRAKLAQIRQIYHQELEKYEQACNEFT--THVMNLLREQSRTRPITPKEIERMVQIIHKKFSSI 216
                           |.|:.|...|.|.  ..|:..       .|:.|.|.||  .::.:....:
plant   283 ---------------EDEQVESDANMFDGGLDVLGF-------GPLIPTESER--SLMERVRQEL 323

  Fly   217 QMQLKQSTCEAVMILRSRFLDARRKRR--NFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCG 279
            :.:|||...|.::.:|...|   ||||  ......:.:|..::.||...|||:||.|..|.::.|
plant   324 KHELKQGYKEKIVDIREEIL---RKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETG 385

  Fly   280 ITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYSMAGPPSG 329
            :.:.|::|||.|:|   |:|.......:.:...|:.      |.||..||
plant   386 LQLKQINNWFINQR---KRNWHSNPSSSTVLKNKRK------SNAGDNSG 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_001259592.1 PBC 41..237 CDD:397732 35/200 (18%)
homeodomain 239..299 CDD:238039 22/61 (36%)
KNAT3NP_197904.1 KNOX1 160..197 CDD:281744 2/3 (67%)
KNOX2 217..267 CDD:281745 11/69 (16%)
ELK 322..343 CDD:281743 5/20 (25%)
Homeobox_KN 362..401 CDD:283551 16/41 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11850
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X78
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.010

Return to query results.
Submit another query.