DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment exd and RPL

DIOPT Version :9

Sequence 1:NP_001259592.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_195823.1 Gene:RPL / 831745 AraportID:AT5G02030 Length:575 Species:Arabidopsis thaliana


Alignment Length:293 Identity:67/293 - (22%)
Similarity:109/293 - (37%) Gaps:74/293 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 DNMLI----AEGVAGPEKGGGGAAAASAAAASQGGSLSIDGADNAIEHSDYRAKLAQIRQIYHQE 169
            |:.|:    .|.:.|...||||                    ||..:.|...:.|.::.:.|.|.
plant   204 DSSLLFDPTVENLCGVSDGGGG--------------------DNGKKKSKLISMLDEVYKRYKQY 248

  Fly   170 LEKYEQACNEF--------TTHVMNL-LREQSRTRPITPKEIERMVQIIHKKFSSIQMQLK---- 221
            .|:.:.....|        .....|| |:..|:........|...:|..|.  :.||.|.:    
plant   249 YEQLQAVMGSFECVAGLGHAAPYANLALKALSKHFKCLKNAITDQLQFSHN--NKIQQQQQCGHP 311

  Fly   222 ------------------QSTCEAVMILRSRFLDAR----RKRRNFSKQASEILNEYFYSHLSNP 264
                              :..|.|..  |..|.|..    |..|...::|..:|..:.:.|..:|
plant   312 MNSENKTDSLRFGGSDSSRGLCSAGQ--RHGFPDHHAPVWRPHRGLPERAVTVLRAWLFDHFLHP 374

  Fly   265 YPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYSMAGPPSG 329
            ||::..|..||::.|::.:||||||.|.|:|..|.:   .||.::...:::..:|..|.....:.
plant   375 YPTDTDKLMLAKQTGLSRNQVSNWFINARVRVWKPM---VEEIHMLETRQSQRSSSSSWRDERTS 436

  Fly   330 TTTPMMSPAPPQDSMGYPMGSGGYDQQQPYDNS 362
            ||      ..|.:|...|..|..  ||:|.::|
plant   437 TT------VFPDNSNNNPSSSSA--QQRPNNSS 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_001259592.1 PBC 41..237 CDD:397732 30/162 (19%)
homeodomain 239..299 CDD:238039 21/63 (33%)
RPLNP_195823.1 POX 165..292 CDD:214728 21/107 (20%)
Homeobox_KN 366..405 CDD:283551 16/38 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11850
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X78
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.100

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