DRSC/TRiP Functional Genomics Resources

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Protein Alignment exd and Pbx4

DIOPT Version :9

Sequence 1:NP_001259592.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001020125.1 Gene:Pbx4 / 80720 MGIID:1931321 Length:378 Species:Mus musculus


Alignment Length:298 Identity:213/298 - (71%)
Similarity:242/298 - (81%) Gaps:11/298 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 DIGEILQQIMSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEPPDPQLM 106
            |..::|||||:|::|||||||||||.|||||||.||||||||||.||.:||: .|||:|||.||:
Mouse    26 DTSDVLQQIMAITDQSLDEAQARKHALNCHRMKSALFSVLCEIKGKTAVSIQ-FQEEDPPDAQLL 89

  Fly   107 RLDNMLIAEGVAGPEKGGGGAAAASAAAASQGGSLSIDGADNAIEHSDYRAKLAQIRQIYHQELE 171
            ||||||:||||:.|||.|.||||.|  .|:.||..:    ||:||||||||||:|||||||.|||
Mouse    90 RLDNMLLAEGVSRPEKRGRGAAAGS--TATPGGCPN----DNSIEHSDYRAKLSQIRQIYHSELE 148

  Fly   172 KYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQMQLKQSTCEAVMILRSRFL 236
            ||||||.||||||.||||||||.||::.:|:|.||..|..|||:||.|||||||||||.||||||
Mouse   149 KYEQACREFTTHVTNLLREQSRVRPVSCREMEHMVNTIQSKFSAIQRQLKQSTCEAVMTLRSRFL 213

  Fly   237 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNIG 301
            |||||||||||||:::|||||||||||||||||.|||||||.|||||||||||||||||||||.|
Mouse   214 DARRKRRNFSKQATDVLNEYFYSHLSNPYPSEETKEELARKGGITVSQVSNWFGNKRIRYKKNTG 278

  Fly   302 KAQEEANLYAAKKAAGASPYSMAGPPSGTTTPMMSPAP 339
            |.||||.:|..|    ||..:.|..|.|.::...:|:|
Mouse   279 KFQEEATMYTGK----ASTVTKARRPRGQSSCQSTPSP 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_001259592.1 PBC 41..237 CDD:397732 139/194 (72%)
homeodomain 239..299 CDD:238039 54/59 (92%)
Pbx4NP_001020125.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24
PBC 25..214 CDD:281746 139/194 (72%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..125 13/30 (43%)
homeodomain 216..276 CDD:238039 54/59 (92%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 291..320 7/22 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 355..378
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167842707
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0774
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D348471at33208
OrthoFinder 1 1.000 - - FOG0000743
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11850
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X78
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.810

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