DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment exd and PBX4

DIOPT Version :9

Sequence 1:NP_001259592.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_011526622.1 Gene:PBX4 / 80714 HGNCID:13403 Length:391 Species:Homo sapiens


Alignment Length:373 Identity:228/373 - (61%)
Similarity:262/373 - (70%) Gaps:48/373 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 KQKDIGEILQQIMSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKT--------------- 88
            ::.|..::|||||:|::|||||||||||.|||||||||||||||||||||               
Human    15 RRLDTSDVLQQIMAITDQSLDEAQARKHALNCHRMKPALFSVLCEIKEKTASSFLTRPCEETTKQ 79

  Fly    89 --VLSIRNTQEEEPPDPQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQGGSLSIDGADNAIE 151
              ::|||..|:|:|||.||:||||||:||||..|||.|.|.|.|.|..|:.||..:    ||:||
Human    80 AFLVSIRGIQDEDPPDAQLLRLDNMLLAEGVCRPEKRGRGGAVARAGTATPGGCPN----DNSIE 140

  Fly   152 HSDYRAKLAQIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSI 216
            ||||||||:|||||||.|||||||||.||||||.|||:||||.||::||||||||..||.|||:|
Human   141 HSDYRAKLSQIRQIYHSELEKYEQACREFTTHVTNLLQEQSRMRPVSPKEIERMVGAIHGKFSAI 205

  Fly   217 QMQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGIT 281
            |||||||||||||.||||.||||||||||||||:|:|||||||||:|||||||||||||||.|:|
Human   206 QMQLKQSTCEAVMTLRSRLLDARRKRRNFSKQATEVLNEYFYSHLNNPYPSEEAKEELARKGGLT 270

  Fly   282 VSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYSMAG--------PPSGTTTPMMSPA 338
            :|||||||||||||||||:||.||||.:|..|.|...:...:.|        |.||::.|...|:
Human   271 ISQVSNWFGNKRIRYKKNMGKFQEEATIYTGKTAVDTTEVGVPGNHASCLSTPSSGSSGPFPLPS 335

  Fly   339 PPQ--------DSMGYPMGSGGYDQQ----------QPYDNSMGGYDP 368
            ...        .|:..|.|.|....|          ||...|..| ||
Human   336 AGDAFLTLRTLASLQPPPGGGCLQSQAQGSWQGATPQPATASPAG-DP 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_001259592.1 PBC 41..237 CDD:397732 144/212 (68%)
homeodomain 239..299 CDD:238039 53/59 (90%)
PBX4XP_011526622.1 PBC 18..226 CDD:281746 144/211 (68%)
homeodomain 228..289 CDD:238039 54/60 (90%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165152651
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0774
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D348471at33208
OrthoFinder 1 1.000 - - FOG0000743
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11850
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X78
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
98.810

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