DRSC/TRiP Functional Genomics Resources

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Protein Alignment exd and pknox1.1

DIOPT Version :9

Sequence 1:NP_001259592.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_571966.3 Gene:pknox1.1 / 798151 ZFINID:ZDB-GENE-020122-5 Length:433 Species:Danio rerio


Alignment Length:402 Identity:73/402 - (18%)
Similarity:136/402 - (33%) Gaps:149/402 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 MMAPQGYGLSGQDDGQN-----AGSENEVRKQKDIGEILQQIMSISEQSLDEAQARKHTLNCHRM 73
            |||.|...:....:|..     ..|||:::|....|........:|.:...:....|..:..|.:
Zfish     1 MMAAQSVSIDKYPEGDQQMQVMEQSENDLKKGFSNGNTGNTSSPVSNEPQTQMDIDKACIYRHPL 65

  Fly    74 KPALFSVLCEIKEKTVLS----------------IRNTQEE------EPPDPQLMRLDNMLIAEG 116
            .| |.::|.|..|::.|.                :|:.:::      |.||     |||:::   
Zfish    66 FP-LLALLFEKCEQSTLGSDCVTSASFDVDIENFVRSQEKDGKAFFSEDPD-----LDNLMV--- 121

  Fly   117 VAGPEKGGGGAAAASAAAASQGGSLSIDGADNAIEHSDYRAKLAQIRQIYHQELEKYEQACNEFT 181
                                                     |..|:.:|:..||||....|.:|.
Zfish   122 -----------------------------------------KAIQVLRIHLLELEKVSDLCKDFC 145

  Fly   182 THVMNLLREQSRTR------------------------PITPKEI-------------------- 202
            :..::.|:.:..:.                        |::|:.:                    
Zfish   146 SRYISCLKAKMNSETLLSGDPGSPYSPVHDQLSNPFSGPLSPQSLLIPSSGLQQGSVTVTTVNSS 210

  Fly   203 -------------------ERMVQII-----HKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRR 243
                               :.:.|.|     |.:.|.:|:||.|.    :..........:.||.
Zfish   211 QVATGNTVYQPVTVVTPQGQVVTQAISPGALHIQNSQLQLQLNQD----LSFFGGDDSSPKNKRG 271

  Fly   244 NFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNIGKAQEEAN 308
            ...|||:.::..:.:.|:::|||:||.|:::|.:..:|:.||:|||.|.|.|..:.:..|.....
Zfish   272 VLPKQATNVMRSWLFQHIAHPYPTEEEKKQIATQTNLTLLQVNNWFINARRRILQPMLDANSTEA 336

  Fly   309 LYAAKKAAGASP 320
            ..:.||.|.:.|
Zfish   337 SKSKKKVAQSRP 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_001259592.1 PBC 41..237 CDD:397732 37/285 (13%)
homeodomain 239..299 CDD:238039 22/59 (37%)
pknox1.1NP_571966.3 Meis_PKNOX_N 82..166 CDD:293102 17/132 (13%)
Homeobox_KN 284..323 CDD:283551 16/38 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587153
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X78
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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