DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment exd and pbx2

DIOPT Version :9

Sequence 1:NP_001259592.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_017206849.1 Gene:pbx2 / 58136 ZFINID:ZDB-GENE-000405-5 Length:420 Species:Danio rerio


Alignment Length:384 Identity:258/384 - (67%)
Similarity:294/384 - (76%) Gaps:41/384 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 TG-GMMAPQGYGLS--------------------GQDDGQNAGSENEVRKQKDIGEILQQIMSIS 54
            || |..|.:|.|||                    |.|.....|:||....::|||:||||||:|:
Zfish     9 TGNGPSASRGGGLSVHPGMHPLNSIHPAAQHRPDGADPAGLEGTENGHDNRRDIGDILQQIMTIT 73

  Fly    55 EQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEPPDPQLMRLDNMLIAEGVAG 119
            :||||||||:||.|||||||||||||||||||||.||:||.||||||||||:||||||:||||||
Zfish    74 DQSLDEAQAKKHALNCHRMKPALFSVLCEIKEKTGLSMRNVQEEEPPDPQLVRLDNMLLAEGVAG 138

  Fly   120 PEKGGGGAAAASAAAASQGGSLSIDGADNAIEHSDYRAKLAQIRQIYHQELEKYEQACNEFTTHV 184
            ||||||.|||.|||.:|.|.|     .|:::|||||::||:|||.|||.|||||||||:||||||
Zfish   139 PEKGGGAAAAVSAATSSGGMS-----PDSSLEHSDYKSKLSQIRNIYHTELEKYEQACSEFTTHV 198

  Fly   185 MNLLREQSRTRPITPKEIERMVQIIHKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQA 249
            ||||||||||||::|:||||||.|||:||||||.|||||||||||||||||||||||||||||||
Zfish   199 MNLLREQSRTRPVSPREIERMVAIIHRKFSSIQTQLKQSTCEAVMILRSRFLDARRKRRNFSKQA 263

  Fly   250 SEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKK 314
            :|:|||||||||||||||||||||||::|.|||||||||||||||||||||||.||||||||.|.
Zfish   264 TEVLNEYFYSHLSNPYPSEEAKEELAKQCSITVSQVSNWFGNKRIRYKKNIGKYQEEANLYAMKT 328

  Fly   315 AAGA-----SPYSMAGPPSGTTTPMMSPAPPQDS-MGYPMGSGGYDQQQPYDNSMGGYD 367
            |.||     ||::    |:.|.:...|.:...|. :|.|..:|   :|.||  .||..|
Zfish   329 ALGATQSEDSPHT----PNSTGSGSFSLSGSADCFLGVPPMNG---EQPPY--HMGAQD 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_001259592.1 PBC 41..237 CDD:397732 156/195 (80%)
homeodomain 239..299 CDD:238039 54/59 (92%)
pbx2XP_017206849.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587135
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 490 1.000 Inparanoid score I1376
OMA 1 1.010 - - QHG48762
OrthoDB 1 1.010 - - D348471at33208
OrthoFinder 1 1.000 - - FOG0000743
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11850
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X78
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1010.010

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