DRSC/TRiP Functional Genomics Resources

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Protein Alignment exd and Pbx2

DIOPT Version :9

Sequence 1:NP_001259592.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001002828.1 Gene:Pbx2 / 406164 RGDID:1303084 Length:430 Species:Rattus norvegicus


Alignment Length:384 Identity:264/384 - (68%)
Similarity:292/384 - (76%) Gaps:40/384 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 GGMMAPQGYGLSGQDDGQNAGSENEVRKQKDIGEILQQIMSISEQSLDEAQARKHTLNCHRMKPA 76
            ||...|.|    |.|.|..:|.....|.::|||:||||||:|::||||||||:||.|||||||||
  Rat    26 GGPGEPPG----GGDPGGGSGGVPGGRGKQDIGDILQQIMTITDQSLDEAQAKKHALNCHRMKPA 86

  Fly    77 LFSVLCEIKEKTVLSIRNTQEEEPPDPQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQGGSL 141
            ||||||||||||.||||::|||||.|||||||||||:||||||||||||.||||:|||||.||. 
  Rat    87 LFSVLCEIKEKTGLSIRSSQEEEPVDPQLMRLDNMLLAEGVAGPEKGGGSAAAAAAAAASGGGV- 150

  Fly   142 SIDGADNAIEHSDYRAKLAQIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMV 206
               ..||:|||||||:||||||.|||.||||||||||||||||||||||||||||:.|||:||||
  Rat   151 ---SPDNSIEHSDYRSKLAQIRHIYHSELEKYEQACNEFTTHVMNLLREQSRTRPVAPKEMERMV 212

  Fly   207 QIIHKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAK 271
            .|||:|||:||||||||||||||||||||||||||||||||||:|:|||||||||||||||||||
  Rat   213 SIIHRKFSAIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAK 277

  Fly   272 EELARKCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKA-----AGASPYSMAGPPSGTT 331
            ||||:||||||||||||||||||||||||||.|||||:||.|.|     .|.|..|...|||...
  Rat   278 EELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAVKTAVSVAQGGHSRTSSPTPPSSAG 342

  Fly   332 T----------------PMMS----PAPPQDSMGYPMGSGGYDQQQPYDNSMGG--YDP 368
            :                |.::    ||...:|:.:.||...|.     ||..||  |.|
  Rat   343 SGGSFNLSGSGDMFLGMPGLNGDSYPASQVESLRHSMGPASYG-----DNIGGGQIYSP 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_001259592.1 PBC 41..237 CDD:397732 163/195 (84%)
homeodomain 239..299 CDD:238039 56/59 (95%)
Pbx2NP_001002828.1 PBC 50..243 CDD:281746 163/196 (83%)
homeodomain 245..305 CDD:238039 56/59 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166346170
Domainoid 1 1.000 330 1.000 Domainoid score I1120
eggNOG 1 0.900 - - E1_KOG0774
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 487 1.000 Inparanoid score I1374
OMA 1 1.010 - - QHG48762
OrthoDB 1 1.010 - - D348471at33208
OrthoFinder 1 1.000 - - FOG0000743
OrthoInspector 1 1.000 - - otm45280
orthoMCL 1 0.900 - - OOG6_104641
Panther 1 1.100 - - O PTHR11850
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X78
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

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