DRSC/TRiP Functional Genomics Resources

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Protein Alignment exd and Pbx2

DIOPT Version :10

Sequence 1:NP_523360.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_063135418.1 Gene:Pbx2 / 406164 RGDID:1303084 Length:643 Species:Rattus norvegicus


Alignment Length:412 Identity:264/412 - (64%)
Similarity:292/412 - (70%) Gaps:68/412 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 GGMMAPQGYGLSGQDDGQNAGSENEVRKQKDIGEILQQIMSISEQSLDEAQARKHTLNCHRMKPA 76
            ||...|.|    |.|.|..:|.....|.::|||:||||||:|::||||||||:||.|||||||||
  Rat   211 GGPGEPPG----GGDPGGGSGGVPGGRGKQDIGDILQQIMTITDQSLDEAQAKKHALNCHRMKPA 271

  Fly    77 LFSVLCEIKEKTVLSIRNTQEEEPPDPQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQGGSL 141
            ||||||||||||.||||::|||||.|||||||||||:||||||||||||.||||:|||||.||. 
  Rat   272 LFSVLCEIKEKTGLSIRSSQEEEPVDPQLMRLDNMLLAEGVAGPEKGGGSAAAAAAAAASGGGV- 335

  Fly   142 SIDGADNAIEHSDYRAKLAQIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMV 206
               ..||:|||||||:||||||.|||.||||||||||||||||||||||||||||:.|||:||||
  Rat   336 ---SPDNSIEHSDYRSKLAQIRHIYHSELEKYEQACNEFTTHVMNLLREQSRTRPVAPKEMERMV 397

  Fly   207 QIIHKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAK 271
            .|||:|||:||||||||||||||||||||||||||||||||||:|:|||||||||||||||||||
  Rat   398 SIIHRKFSAIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAK 462

  Fly   272 EELARKCGITVS----------------------------QVSNWFGNKRIRYKKNIGKAQEEAN 308
            ||||:|||||||                            |||||||||||||||||||.|||||
  Rat   463 EELAKKCGITVSQVLRGLRRRYWERGPGERVPLDPLRPTPQVSNWFGNKRIRYKKNIGKFQEEAN 527

  Fly   309 LYAAKKA-----AGASPYSMAGPPSGTTT----------------PMMS----PAPPQDSMGYPM 348
            :||.|.|     .|.|..|...|||...:                |.::    ||...:|:.:.|
  Rat   528 IYAVKTAVSVAQGGHSRTSSPTPPSSAGSGGSFNLSGSGDMFLGMPGLNGDSYPASQVESLRHSM 592

  Fly   349 GSGGYDQQQPYDNSMGG--YDP 368
            |...|.     ||..||  |.|
  Rat   593 GPASYG-----DNIGGGQIYSP 609

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_523360.1 PBC 42..237 CDD:461052 163/194 (84%)
homeodomain 239..299 CDD:238039 56/87 (64%)
Pbx2XP_063135418.1 None

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