DRSC/TRiP Functional Genomics Resources

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Protein Alignment exd and pbx4

DIOPT Version :9

Sequence 1:NP_001259592.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_571522.1 Gene:pbx4 / 30728 ZFINID:ZDB-GENE-000201-18 Length:343 Species:Danio rerio


Alignment Length:354 Identity:263/354 - (74%)
Similarity:291/354 - (82%) Gaps:28/354 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDPNRMLAHTGGMMAPQGYGLSGQDDGQNAGSENEVRK-------QKDIGEILQQIMSISEQSL 58
            |:|..||||..||:     .|||..|    .|..:.|||       |:|||:||||||:|:::||
Zfish     1 MDDQTRMLASMGGL-----GGLSQAD----VGDPDSVRKQQSLGQPQQDIGDILQQIMAITDESL 56

  Fly    59 DEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEPPDPQLMRLDNMLIAEGVAGPEKG 123
            ||||||||.|||||:||||||||||||||||||||..|||:|||||:|||||||:||||:|||||
Zfish    57 DEAQARKHALNCHRLKPALFSVLCEIKEKTVLSIRGVQEEDPPDPQIMRLDNMLLAEGVSGPEKG 121

  Fly   124 GGGAAAASAAAASQGGSLSIDGADNAIEHSDYRAKLAQIRQIYHQELEKYEQACNEFTTHVMNLL 188
            ||.||||:||||: |||.:    |.:||||||||||||||||||.|||||||||:|||.||||||
Zfish   122 GGSAAAAAAAAAA-GGSPN----DGSIEHSDYRAKLAQIRQIYHSELEKYEQACSEFTNHVMNLL 181

  Fly   189 REQSRTRPITPKEIERMVQIIHKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEIL 253
            |||||||||:||||||||.|||:||||||||||||||||||||||||||||||||||:|||:|:|
Zfish   182 REQSRTRPISPKEIERMVAIIHRKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFNKQATEVL 246

  Fly   254 NEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGA 318
            ||||||||||||||||||||||:||||||||||||||||||||||||||.||||||||.|.|..|
Zfish   247 NEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANLYAVKTAVDA 311

  Fly   319 SPYSMAGPPSGTTTPMMSPAPPQDSMGYP 347
            :..|.....:.      |||.| :|.|||
Zfish   312 ANVSAQASQAN------SPATP-NSGGYP 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_001259592.1 PBC 41..237 CDD:397732 163/195 (84%)
homeodomain 239..299 CDD:238039 55/59 (93%)
pbx4NP_571522.1 PBC 39..230 CDD:281746 163/195 (84%)
homeodomain 232..292 CDD:238039 55/59 (93%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587166
Domainoid 1 1.000 332 1.000 Domainoid score I1115
eggNOG 1 0.900 - - E1_KOG0774
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 490 1.000 Inparanoid score I1376
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D348471at33208
OrthoFinder 1 1.000 - - FOG0000743
OrthoInspector 1 1.000 - - otm24544
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11850
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4561
SonicParanoid 1 1.000 - - X78
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.890

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