DRSC/TRiP Functional Genomics Resources

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Protein Alignment exd and Meis3

DIOPT Version :10

Sequence 1:NP_523360.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_036008636.1 Gene:Meis3 / 17537 MGIID:108519 Length:400 Species:Mus musculus


Alignment Length:373 Identity:81/373 - (21%)
Similarity:137/373 - (36%) Gaps:110/373 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 DEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEPPDPQLMRLDNMLIAEGVAGPEKG 123
            |..:..|..:..|    .||.:|..:.||..|:..:.::.              .:.|:..|.  
Mouse    54 DSLKREKDDIYGH----PLFPLLALVFEKCELATCSPRDG--------------ASAGLGSPP-- 98

  Fly   124 GGGAAAAS-------AAAASQ--------GGSLSIDG-------ADNAIEHSDYR---AKLAQIR 163
             ||...:|       ||.|.|        ..:..:|.       .::.:.||.:.   ||:.|..
Mouse    99 -GGDVCSSDSFNEDIAAFAKQIRSERPLFSSNPELDNLNSRWSETESQLCHSSFMNQGAKMVQAI 162

  Fly   164 QI--YH-QELEKYEQACNEFTTHVMNLLR---------------------EQSRTRPITPKEIER 204
            |:  :| .||||....|:.|....:..|:                     :.:.:.|..|.:...
Mouse   163 QVLRFHLLELEKVHDLCDNFCHRYITCLKGKMPIDLVIEDRDGSCREDLEDYAASCPSLPDQNTT 227

  Fly   205 MVQIIHKKFSSIQM-----------------------QLKQSTCEAVMILRSRFLDARRKRRN-- 244
            .:: .|:...|:.:                       .|..|............||..|:|..  
Mouse   228 WIR-DHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGDGLDTSVASPSSAGEDEDLDLERRRNKKR 291

  Fly   245 --FSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNIGKAQEEA 307
              |.|.|:.|:..:.:.|||:||||||.|::||:..|:|:.||:|||.|.|   ::.:....:::
Mouse   292 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINAR---RRIVQPMIDQS 353

  Fly   308 NLYAAKKAAGASPYSMAGPPSG---TTTPMMSPAPPQDSMGYPMGSGG 352
            |    :...||| ::..|.|..   .|.|.::...| .|||..:...|
Mouse   354 N----RTGQGAS-FNPEGQPMAGFTETQPQVTVRTP-GSMGMNLNLEG 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_523360.1 PBC 42..237 CDD:461052 39/249 (16%)
homeodomain 239..299 CDD:238039 27/63 (43%)
Meis3XP_036008636.1 Meis_PKNOX_N 99..205 CDD:465140 22/105 (21%)
Homeobox_KN 306..344 CDD:428673 21/40 (53%)

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