DRSC/TRiP Functional Genomics Resources

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Protein Alignment exd and meis1a

DIOPT Version :9

Sequence 1:NP_001259592.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_571972.2 Gene:meis1a / 170455 ZFINID:ZDB-GENE-020122-3 Length:380 Species:Danio rerio


Alignment Length:393 Identity:82/393 - (20%)
Similarity:134/393 - (34%) Gaps:151/393 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 PQGYGLSGQDDGQNAGSEN------EVRKQK-------DIGEILQQIMSISEQSLDEAQARKHTL 68
            |:..|::|......:..|:      ::|.:|       |:..::.|.:.:....|.|.: :.|.|
Zfish    93 PRESGVTGDVCSSESFDEDITVFSKQIRAEKPFFSSNPDLDNLMIQAIQVLRFHLLELE-KVHEL 156

  Fly    69 ---NCHRMKPALFSVLCEIKEKTVLSI---------RNTQEEEPPDP-----QLMRLDNMLIAEG 116
               .|||.      :.| :|.|..:.:         |:..||....|     ...|.|:......
Zfish   157 CDNFCHRY------ISC-LKGKMPIDLVVDDKEGGSRSDGEEFTRTPGGSEQVFWREDDTASVHS 214

  Fly   117 VAGPEKGGGGAAAASAAAASQGGSLSIDGADNAIEHSDYRAKLAQIRQIYHQELEKYEQACNEFT 181
            ...|       ||....::|..|       ||:.||.|:                          
Zfish   215 TDTP-------AACGRRSSSHNG-------DNSSEHGDF-------------------------- 239

  Fly   182 THVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRN-- 244
                   .:||...|.|.:|                                  .|..::|:|  
Zfish   240 -------LDQSVASPSTGEE----------------------------------EDPDKERKNNK 263

  Fly   245 ----FSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNIGKAQE 305
                |.|.|:.|:..:.:.||::||||||.|.:|::..|:|:.||:|||.|.|   ::.:....:
Zfish   264 KRGIFPKVATNIMRAWLFQHLTHPYPSEEQKRQLSQDTGLTILQVNNWFINAR---RRIVQPMID 325

  Fly   306 EANLYAAKKAAGAS-PYSMAGPPSGTTTPMMSPAPPQDSMGY--PMGSGGYDQQQPYDNSMGGYD 367
            ::|     :|.|.| ||:....|.|...     ...|..||.  |...||          :||.:
Zfish   326 QSN-----RAVGHSGPYTPDAQPMGGFV-----MDGQSHMGIRPPAALGG----------LGGVN 370

  Fly   368 PNL 370
            ..|
Zfish   371 MGL 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_001259592.1 PBC 41..237 CDD:397732 34/219 (16%)
homeodomain 239..299 CDD:238039 25/65 (38%)
meis1aNP_571972.2 Meis_PKNOX_N 99..182 CDD:293102 16/90 (18%)
Homeobox_KN 279..318 CDD:283551 19/41 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587130
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X78
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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