DRSC/TRiP Functional Genomics Resources

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Protein Alignment exd and meis1b

DIOPT Version :9

Sequence 1:NP_001259592.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_571968.1 Gene:meis1b / 170446 ZFINID:ZDB-GENE-020122-1 Length:388 Species:Danio rerio


Alignment Length:125 Identity:40/125 - (32%)
Similarity:65/125 - (52%) Gaps:18/125 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 RRKRRN-----FSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKK 298
            :.|:||     |.|.|:.|:..:.:.||::||||||.|::||:..|:|:.||:|||.|.|   ::
Zfish   266 KEKKRNKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINAR---RR 327

  Fly   299 NIGKAQEEANLYAAKKAAGASPYSMAGPP------SGTTTPMMSPAPPQDSMGYPMGSGG 352
            .:....:::|    :..:..:||:..|.|      .|.....:.|..|...||..||..|
Zfish   328 IVQPMIDQSN----RAVSQGAPYNPDGQPMGGFVMDGQQHMGIRPPGPMSGMGMNMGMEG 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_001259592.1 PBC 41..237 CDD:397732
homeodomain 239..299 CDD:238039 27/64 (42%)
meis1bNP_571968.1 Meis_PKNOX_N 106..190 CDD:406806
Homeobox_KN 288..327 CDD:399131 20/41 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587129
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X78
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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