DRSC/TRiP Functional Genomics Resources

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Protein Alignment exd and meis2

DIOPT Version :9

Sequence 1:NP_001259592.1 Gene:exd / 32567 FlyBaseID:FBgn0000611 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_012823255.1 Gene:meis2 / 100036664 XenbaseID:XB-GENE-487675 Length:409 Species:Xenopus tropicalis


Alignment Length:120 Identity:41/120 - (34%)
Similarity:61/120 - (50%) Gaps:6/120 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNIGKA 303
            ::||..|.|.|:.|:..:.:.||::||||||.|::||:..|:|:.||:|||.|.|.|..:.:...
 Frog   285 QKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 349

  Fly   304 QEEANLYAAKKAAGASPYSMAGPPSGTTT------PMMSPAPPQDSMGYPMGSGG 352
            ...|........:..:.||..|.|.|:..      ..:.||.|...||..||..|
 Frog   350 SNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGPMSGMGMNMGMDG 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exdNP_001259592.1 PBC 41..237 CDD:397732
homeodomain 239..299 CDD:238039 27/59 (46%)
meis2XP_012823255.1 Meis_PKNOX_N 118..202 CDD:374576
Homeobox_KN 302..341 CDD:368670 20/38 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X78
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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