DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ND-20 and AT5G11770

DIOPT Version :9

Sequence 1:NP_001285313.1 Gene:ND-20 / 32565 FlyBaseID:FBgn0030718 Length:221 Species:Drosophila melanogaster
Sequence 2:NP_196738.1 Gene:AT5G11770 / 831049 AraportID:AT5G11770 Length:218 Species:Arabidopsis thaliana


Alignment Length:218 Identity:137/218 - (62%)
Similarity:161/218 - (73%) Gaps:12/218 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SSTLSRALQKATQTPNASIS----ALPALNLALVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVA 68
            ::.|...||.......||:|    :||||:      ..|.|.:......|.....|.|.  |..|
plant     9 ATRLPLLLQSQRAVAAASVSHLHTSLPALS------PSTSPTSYTRPGPPSTSPPPPGL--SKAA 65

  Fly    69 EWSLARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGT 133
            |:.::::|||:||.|.|||||:|||||||||||||..|.|||:||:|::||.||||:|.:|||||
plant    66 EFVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGT 130

  Fly   134 LTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEAL 198
            ||||||||||||||||||||||||||||||||||||||||||||||||:||||||||||||||||
plant   131 LTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 195

  Fly   199 MYGVLQLQKKVKRMKTLQMWYRK 221
            :||:||||||:.|.|....|:.|
plant   196 LYGLLQLQKKINRRKDFLHWWNK 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ND-20NP_001285313.1 PRK06411 72..213 CDD:235797 116/140 (83%)
AT5G11770NP_196738.1 PRK06411 67..215 CDD:235797 117/147 (80%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 215 1.000 Domainoid score I749
eggNOG 1 0.900 - - E1_COG0377
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H11535
Inparanoid 1 1.050 279 1.000 Inparanoid score I879
OMA 1 1.010 - - QHG60686
OrthoDB 1 1.010 - - D1278656at2759
OrthoFinder 1 1.000 - - FOG0003606
OrthoInspector 1 1.000 - - otm2956
orthoMCL 1 0.900 - - OOG6_100846
Panther 1 1.100 - - LDO PTHR11995
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2960
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

Return to query results.
Submit another query.