DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mmd and Adam3a

DIOPT Version :9

Sequence 1:NP_001285311.1 Gene:mmd / 32561 FlyBaseID:FBgn0259110 Length:1484 Species:Drosophila melanogaster
Sequence 2:NP_064698.1 Gene:Adam3a / 57021 RGDID:621469 Length:740 Species:Rattus norvegicus


Alignment Length:780 Identity:190/780 - (24%)
Similarity:323/780 - (41%) Gaps:131/780 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 RTSLLIKAFNHKFRLDLELNSQLLSPNIQQKHYHVGGY-----LVDGNRHDIEHCYYHGTVKDYP 173
            :.:.:|:.....:.|.||..|.|....:...|..:|..     ||.      .||:|.|...:.|
  Rat    47 QVTYVIRIEGKAYTLQLEKQSFLHPHFVTNLHNKLGTLQPYFSLVK------SHCFYQGHAVEIP 105

  Fly   174 GASAAFHTCNGVSGVIHIGNETFVIHPFYGGDLSKHPHVIFEAR------TKANKGCANS-GNLD 231
            .::....||:|:.|::.:.|.|:.|.|.......:  |:::|.:      :...:...|| ....
  Rat   106 ASTVTLSTCSGLRGLLQLENVTYGIEPLESSTTLE--HILYEIQNHKIDYSPLKENYTNSQDESG 168

  Fly   232 SWRLSRRTKHLSAGVAGVVEEILQAGVGRNKRDVREATKYIETAIIVDKAMFDKRNGSTRAEVIH 296
            |:|:             :|:.:..:.....||       .:...||:||.||| ..||.......
  Rat   169 SYRI-------------LVKPLKSSNSKLRKR-------ILTVKIIMDKGMFD-HVGSEVGVATQ 212

  Fly   297 DAIQVANIADLYFRTLNTRVSVVYIETWGKNQAVIDGSKDISKAISNFNDYTSRNLFQIERDTTQ 361
            ..:|:..:.:..|..|...|.:..:|.|.:... |:.:.|..:.:..|..:|.:.:.|..::.|.
  Rat   213 KVVQMFGLINTMFSQLKMTVMLNSLEIWSEENK-IETNGDADEVLQRFLLWTHKEMPQTTKEITY 276

  Fly   362 LL--------TGETFAGGEAGMAVPETVCTPR-AVGISVDVNVYEPHLLAGTMAHMIGHNIGMGH 417
            ||        .|.|:    .|||     |.|: ..||::..........|..::.::|.|:|:.:
  Rat   277 LLLYKDHPDYVGATY----HGMA-----CNPKFTAGIALHPKTLGVEGFAIVLSQLLGINLGLTY 332

  Fly   418 DDGREECFCRDWHGCIMAQSIVGQENVQPYKFSECSKKDYIDALRTGHGLCLLNKPNEIEL---- 478
            || ...||||. ..|||..|.:..|.::  .||.||..::..........||| |..|.|:    
  Rat   333 DD-IYNCFCRG-STCIMNPSAIHSEGIK--VFSSCSMDEFRQLASQPDLDCLL-KTQETEVVALP 392

  Fly   479 --RRNCGNKVVEEDEECDCGTFEECALDQCCDGITCKLKSEAQCASGACCDQ--CRLRPKDYICR 539
              .:.|||.::|..|:||||..|.|:..:||....|.|.|:|:|.||||||:  |::..:..:||
  Rat   393 QAAKVCGNYILEPPEQCDCGPAERCSHKKCCKSEDCTLLSDAECGSGACCDKRTCKIAERGRLCR 457

  Fly   540 DSNNECDLPEYCDGEIGQCPSDVFKKNGSPCGLSKTGISGYCFQGYCPTLSLQCEAIWGYGGSAA 604
            .|.::||.||:|:|....|.:|:...:..||    ...:.|||:|.|.....||..::|......
  Rat   458 KSTDQCDFPEFCNGTSEFCVADIKAADLEPC----NNETAYCFKGVCQDRDRQCTDLFGKYAKGP 518

  Fly   605 DRQCYEQFNSKGSINGHC-GRDANEHYIKCEPENVQCGTLQCKDGERQPV-NDGIDQLYSRTIIS 667
            :..|.::.|.:....|:| ||        |....:.||...|.....:.| .|..|..|:    .
  Rat   519 NYVCAQEVNLQNDKFGNCHGR--------CNYSALFCGKAVCYWSFAELVKTDVFDVQYT----Y 571

  Fly   668 IKGQEFECKATSGQVGSNSYPEHGLVKDGTPCGDNLICLNQTCVSLFPHVDQTKCPANSQGLECS 732
            :.||  .|.:...:|.::...:...|:|||.||:..:|....|:.:.......:|.|:.   :|.
  Rat   572 LGGQ--VCVSAHLRVRNDETKDDTYVRDGTICGNGQVCYRGECLRVHVLRGDRECEADD---KCQ 631

  Fly   733 EHGVCTNTNRCFCDMGWGGNDCSSVVLLTTALPTEA------LPTPENTIKMEKKETPYGTSDQN 791
            .||:|.|.|.|.|:.|:...:|.    :|.:.|..:      ||..::|..:.|:.   ||..:.
  Rat   632 GHGICNNQNNCQCEAGFAPPECD----MTPSSPGGSMDDGFWLPLDKSTPLVIKRP---GTQYKK 689

  Fly   792 RISTLTMVIILTVIVKCVFISFATLAVCYRRKTTTLKYDPPYSKKPIAKSYGGAATAPNHHSVEE 856
            .:.....|.:..:||..:.:                      .|:.|:|.:|......:..|:.|
  Rat   690 GLLISFYVFLPFLIVTAIMV----------------------VKQNISKMFGQGEEEFSEGSISE 732

  Fly   857  856
              Rat   733  732

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mmdNP_001285311.1 Pep_M12B_propep 106..213 CDD:279848 24/103 (23%)
Reprolysin 270..473 CDD:279729 54/211 (26%)
ZnMc_adamalysin_II_like 270..471 CDD:239797 53/209 (25%)
Disintegrin 488..562 CDD:278623 32/75 (43%)
ACR 566..713 CDD:214743 36/148 (24%)
Adam3aNP_064698.1 Pep_M12B_propep 40..141 CDD:279848 23/101 (23%)
Reprolysin 193..382 CDD:279729 54/204 (26%)
ZnMc_adamalysin_II_like 193..381 CDD:239797 52/202 (26%)
Disintegrin 404..480 CDD:278623 32/75 (43%)
ACR 483..615 CDD:214743 36/149 (24%)
EB 601..650 CDD:279949 15/51 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339811
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3607
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D162519at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11905
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.850

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