DRSC/TRiP Functional Genomics Resources

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Protein Alignment mmd and si:ch1073-396h14.1

DIOPT Version :10

Sequence 1:NP_001285311.1 Gene:mmd / 32561 FlyBaseID:FBgn0259110 Length:1484 Species:Drosophila melanogaster
Sequence 2:XP_689465.6 Gene:si:ch1073-396h14.1 / 560975 ZFINID:ZDB-GENE-070705-6 Length:683 Species:Danio rerio


Alignment Length:672 Identity:162/672 - (24%)
Similarity:256/672 - (38%) Gaps:178/672 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 ILIIAQLCVFVTSAGEADYTLDDSFWNEESPVGEVERLLKEYR---QNQELVRRIGGHYYQIIYP 70
            :|..|::|:.:       |.|....:.|.|..  :.:.:|.|.   .::|||::   |.::|   
Zfish     5 LLNAARICLLI-------YILSRGHFTEASQA--ISKYIKHYEGLSYDRELVKQ---HQHRI--- 54

  Fly    71 VQLRHHEKMGISTREVSLPKPGQRPRPHDDSGFNRGRTKKHFHRTSLLIKAFNHKFRLDLELNSQ 135
                        .|:.:   |.::....|.|.|.|   :.|...|..:...|...|::..|..||
Zfish    55 ------------RRDAN---PNKQDLHLDFSAFQR---EFHLRLTPDVNNGFTEDFKVQSENESQ 101

  Fly   136 LLSPNIQQKHYHVGGYLVDGNRHDIEHCYYHGTVKDYPGASAAFHTCNG------VSGVIHIGNE 194
            ::                     |:.| .|.|.::|...:|     |.|      ..|.|...|.
Zfish   102 MV---------------------DLSH-IYSGVLEDDSKSS-----CQGSVLEGQFEGSITTSNG 139

  Fly   195 TFVIHPF--YGGDLSKHPHVIFEARTKANKGCANSGNLDSWRLSRRTKHLSAGVAGV--VEEIL- 254
            ||.:.|.  |....|.|..:|:           :..::|...|  |:.|  ||..|.  ::.:| 
Zfish   140 TFYVEPIERYKTTHSDHHSIIY-----------HEDDVDDTPL--RSGH--AGFCGAERLQNLLQ 189

  Fly   255 ----QAGVGRNKRDVREATKYIETAIIVDKAMFDKRNGSTRAEVIHDAIQVANIADLY------- 308
                |..|.|:||.|.::.......:..|...: ||.||..|.|...|..:..:.|:|       
Zfish   190 NHQEQIPVSRSKRKVDQSKTSCLLHLHTDHRYY-KRFGSIEAIVAQVASYMKAVNDVYDKANFDG 253

  Fly   309 FRTLNTRVSVVYIETWGKNQAVIDGSKDIS-------KAISNFNDYTSRNLFQIERDTTQLLTGE 366
            ...:|.:|..:.:.|      ..|.|..||       |.:|.|:: |:.|.|.:    :.|||..
Zfish   254 IELINFKVKFLTVIT------EEDPSSPISVTHVGPEKLLSLFSE-TNWNDFCL----SYLLTDR 307

  Fly   367 TFAG--GEAGMAVPET---VCTPRAV----------GISVDVNVYEPHLLAG----TMAHMIGHN 412
            .|:|  |.|.....:.   :|:...:          |: |.:..|..:|...    |.||.:||:
Zfish   308 DFSGVLGLAWEGKADNWGGICSKMILKSGRNCSHNTGL-VTLQTYGHYLSTKHVHLTFAHELGHS 371

  Fly   413 IGMGHDDGREECFCRDWH-----GCIM----AQSIVGQENVQPYKFSECSKKDYIDALRTGHGLC 468
            :|..||   |...|.|..     |..:    |.|.: :||..  |||.||.:.....|......|
Zfish   372 LGAPHD---ENSNCGDLEVTSGKGRFLMFPKAASRI-EENSD--KFSPCSLRHMSHLLNVKKDTC 430

  Fly   469 LLNKPNEIELRRNCGNKVVEEDEECDCGTFEECALDQCC------DGITCKLKSEAQC--ASGAC 525
            .::....|     |||::|||.||||.|..:.   |.||      .||.|:||...||  :.|.|
Zfish   431 FVDSDQPI-----CGNRIVEEGEECDVGHDDS---DPCCHSSKEPSGIECRLKLGKQCSPSQGLC 487

  Fly   526 CD-QCRLRPKDYICRDSNNECDLPEYCDGEIGQCPSDVFKKNGSPCGL-SKTGISGYCFQGYCPT 588
            |: ||..:....:| :.|:||.....|.|....||....|.:.:.|.. ::...||.|....|..
Zfish   488 CNSQCVFKKAGLMC-EGNSECRNKSVCAGSSAVCPEPPSKPDMTICSNGTRVCSSGECGLSLCAL 551

  Fly   589 LSL-QCEAIWGYGGSAADRQCY 609
            .:: ||:.    .|.:...:|:
Zfish   552 HNMVQCDC----PGQSKTEKCH 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mmdNP_001285311.1 Pep_M12B_propep 104..214 CDD:460254 25/117 (21%)
ZnMc_adamalysin_II_like 270..471 CDD:239797 58/242 (24%)
Disintegrin 488..561 CDD:459709 30/81 (37%)
ACR 566..713 CDD:214743 9/46 (20%)
si:ch1073-396h14.1XP_689465.6 Pep_M12B_propep 47..161 CDD:460254 33/164 (20%)
ZnMc 209..438 CDD:469599 58/247 (23%)
Disintegrin 445..523 CDD:459709 30/81 (37%)

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