DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mmd and Adam23

DIOPT Version :9

Sequence 1:NP_001285311.1 Gene:mmd / 32561 FlyBaseID:FBgn0259110 Length:1484 Species:Drosophila melanogaster
Sequence 2:NP_001025070.2 Gene:Adam23 / 301460 RGDID:1305739 Length:828 Species:Rattus norvegicus


Alignment Length:840 Identity:255/840 - (30%)
Similarity:389/840 - (46%) Gaps:119/840 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LILIIAQLCVFVTSA-----GEADYTLDDSFWNE--ESPVGEVERLLKEYRQN-------QELVR 58
            |:|::..|.....|:     |.|  .|....|||  |:..|.|.......:||       ...|:
  Rat    42 LLLVLLLLPALAASSRPRARGAA--ALSALHWNETAENSPGVVADEDSTLQQNGSRNTSYSSAVQ 104

  Fly    59 RIGGHYYQIIYPVQLRHHEKMGISTREVSLPKPGQRPRPHDDSGFNRGRTKKHFHRTSLLIKAFN 123
            :      :|..|.:|.::......:....|....:..:.|:.:        .|..:.|..|:||.
  Rat   105 K------EITLPSRLVYYINQDSESPYHVLDTKARHQQKHNKA--------VHLAQASFQIEAFG 155

  Fly   124 HKFRLDLELNSQLLSPNIQQKHYHVGG--YLVDGNRHDIEHCYYHGTVKDYPGASAAFHTCNGVS 186
            .||.|||.||:.|||.:..:.||..|.  |...|     |||||||:::....:..|..||||:.
  Rat   156 SKFILDLILNNGLLSSDYVEIHYEDGKQMYSKGG-----EHCYYHGSIRGVKDSRVALSTCNGLH 215

  Fly   187 GVIHIGNETFVIHPF---YGGDLSKHPHVIFEA----RTKANKGCANSGNLDSWRL------SRR 238
            |:.......::|.|.   :....:..||:|.:.    .:|..|..:..|: |.|.|      .||
  Rat   216 GMFEDDTFVYMIEPLELTHDEKSTGRPHIIQKTLAGQYSKQMKNLSTDGS-DQWPLLPELQWLRR 279

  Fly   239 TKHLSAGVAGVVEEILQAGVGRNKRDVREATKYIETAIIVDKAMFDKRNGSTRAEVIHDAIQVAN 303
            .|.......||.||:                ||:|..|:.|...: |::.|:.|...:.|..|.|
  Rat   280 RKRAVNPSRGVFEEM----------------KYLELMIVNDHKTY-KKHRSSHAHTNNFAKSVVN 327

  Fly   304 IAD-LYFRTLNTRVSVVYIETW-GKNQAVIDGSKDISKAISNFNDYTSRNLFQIERDTTQLLTGE 366
            :.| :|...|||||.:|.:||| .|:|  ||.:.:..:.:..|:.|..|  .:...|...|::..
  Rat   328 LVDSIYKEQLNTRVVLVAVETWTEKDQ--IDITINPVQMLHEFSKYRQR--IKQHADAVHLISRV 388

  Fly   367 TFAGGEAGMAVPETVCTPRAVGISVDVNVYE-PHLLAGTMAHMIGHNIGMGHDDG--REECFC-R 427
            ||....:.::....||: |..|  |.||.|. |..:|..::..:..|:|:..:..  :.:|.| .
  Rat   389 TFHYKRSSLSYFGGVCS-RVKG--VGVNEYGLPMAVAQVLSQSLAQNLGIQWEPSSRKPKCECIE 450

  Fly   428 DWHGCIMAQSIVGQENVQPYKFSECSKKDYIDALRTGHGLCLLNKPNEIELRRNCGNKVVEEDEE 492
            .|.||||.::.|....    |||:||..:|.|.|:.|.|.||.|:|.::.....|||..||..||
  Rat   451 SWGGCIMEETGVSHSR----KFSKCSILEYRDFLQRGGGACLFNRPTKLFEPTECGNGYVEAGEE 511

  Fly   493 CDCGTFEECALDQCCDGITCKLKSEAQCASGACCD--QCRLRPKDYICRDSNNECDLPEYCDGEI 555
            ||||...|| ...||.  .|.|.:.|.|:.|.||:  .|..:.:.|.|||:.|.||:.|||.|:.
  Rat   512 CDCGFHVEC-YGVCCK--KCSLSNGAHCSDGPCCNNTSCLFQSRGYECRDAVNSCDITEYCTGDS 573

  Fly   556 GQCPSDVFKKNGSPCGLSKTGISGYCFQGYCPTLSLQCEAIWGYGGSAADRQCYEQFNSKGSING 620
            ||||.::.|::|..|..::    |.|:.|.|.|...||:.|||...|.:|:.|||:.|::|:..|
  Rat   574 GQCPPNLHKQDGYACNQNQ----GRCYNGECKTRDNQCQYIWGTKASGSDKFCYEKLNTEGTEKG 634

  Fly   621 HCGRDANEHYIKCEPENVQCGTLQCKDGERQPVNDGIDQLYSRTIISI---KGQEFECKATSGQV 682
            :||:| .:.:|:|...:|.||.|.|.:..|.|   .|.||....|.:.   :|:..:|  :...|
  Rat   635 NCGKD-GDRWIQCSKHDVFCGFLLCTNLTRAP---RIGQLQGEIIPTSFYHQGRVIDC--SGAHV 693

  Fly   683 GSNSYPEHGLVKDGTPCGDNLICLNQTCVSLFPHVDQTKCPANSQGLECSEHGVCTNTNRCFCDM 747
            ..:...:.|.|:||||...:::||::.|:.: ..::.:.||.:|:|..||.||||:|...|.||.
  Rat   694 VLDDDTDVGYVEDGTPLCPSMMCLDRKCLQI-QALNMSSCPLDSKGKVCSGHGVCSNEATCICDF 757

  Fly   748 GWGGNDCSSVVLLTTALPTEALPTPENTIKMEKKETPYGTSDQNRI--STLTMVIILTVI 805
            .|.|.|||             :..|.......|.|.|......:|:  :.|..|:.|.||
  Rat   758 TWAGTDCS-------------IRDPVRNPNPPKDEGPKVNMATSRLIGAVLGTVLALGVI 804

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mmdNP_001285311.1 Pep_M12B_propep 106..213 CDD:279848 37/111 (33%)
Reprolysin 270..473 CDD:279729 66/208 (32%)
ZnMc_adamalysin_II_like 270..471 CDD:239797 65/206 (32%)
Disintegrin 488..562 CDD:278623 34/75 (45%)
ACR 566..713 CDD:214743 48/149 (32%)
Adam23NP_001025070.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 75 1.000 Domainoid score I8841
eggNOG 1 0.900 - - E1_KOG3607
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D162519at2759
OrthoFinder 1 1.000 - - FOG0002073
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_103986
Panther 1 1.100 - - O PTHR11905
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X50
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.780

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