DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mmd and adm-4

DIOPT Version :9

Sequence 1:NP_001285311.1 Gene:mmd / 32561 FlyBaseID:FBgn0259110 Length:1484 Species:Drosophila melanogaster
Sequence 2:NP_509318.1 Gene:adm-4 / 181041 WormBaseID:WBGene00000075 Length:686 Species:Caenorhabditis elegans


Alignment Length:707 Identity:158/707 - (22%)
Similarity:256/707 - (36%) Gaps:224/707 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 FNRGRTKKH----FHRTS----LLIKAFNHKFRLDLELNSQLLSPNIQQKHYHVGGYLVDGNRHD 159
            ||. |.|:|    |.|::    :..:..:.::.:|||       ||....|.:...:..||.: .
 Worm    22 FNT-RVKRHAPIRFQRSTRQSVVHFEFLDQEYVVDLE-------PNHSTFHENFKVFTQDGPQ-I 77

  Fly   160 IEHCYYHGTVKDYPGASAAFHTC---NGVSGVIHIGNETFVIHPFYGGDLSKH--PHV-IFEART 218
            :....|.|||:: |.|..|..|.   |...|.::..::|..:.|.|...||..  |.| .||:..
 Worm    78 VPRDEYIGTVRE-PRAGRAVLTQLEENVYIGSLYFVDDTLHLEPSYPHQLSDDLGPVVGYFESDL 141

  Fly   219 KANKGCANSGNLDSWRLSRRTKHLSAGVAGVVEEILQAGVGRNKRDVREATKYIE----TAIIVD 279
            ..        |||                      |.|...||:...|.|..:::    .||..|
 Worm   142 DL--------NLD----------------------LSAMPVRNQVSFRRANPFLKHRRAIAIPSD 176

  Fly   280 K---AMFDKRNGSTRAEVIHDAIQVANIADLYFRTL----NT------------RVSVVYIE-TW 324
            :   .:..|||..|          :..:||..|.::    ||            ||:.:|.. .|
 Worm   177 RRKDVLNVKRNRCT----------LKLVADYSFYSIFGKNNTGIVTKFLVNMIARVNEIYTPINW 231

  Fly   325 -----------GKNQAVIDGSKDI------SKAISNFNDYTSRNLFQIER--------------D 358
                       |:.|.:....|:|      :.:.|::|.|:  .::::||              .
 Worm   232 DVGKEDDISGRGRFQNMGFSIKEIKVLDRPNASDSHYNSYS--RIWEVERLLREFAFAEGSKDFC 294

  Fly   359 TTQLLTGETF-------------------AGGEAGMAVPETVCTPRAV--GISVDVNVYEPHLLA 402
            ...|:|..||                   |||         :|:.:..  |....:||    ||:
 Worm   295 LVHLVTARTFREVATLGLAYVSYKKWDETAGG---------ICSKQETFNGRVAYINV----LLS 346

  Fly   403 GTMA-------------------HMIGHNIGMGH-------DDGREECFCRDWHG--CIMAQSIV 439
            .:.|                   |..||..|..|       |...|||...|.:|  .:|:|...
 Worm   347 TSFANSEQSTYPLITKEIDIVVSHEYGHAWGATHDPTIDSDDPDVEECSPNDQNGGKYLMSQYAQ 411

  Fly   440 GQENVQPYKFSECSKKDYIDALRTGHGLCLLNKPNEIELRRNCGNKVVEEDEECDCGTFEECALD 504
            ...:.....||.||:|...|.|......|.     :.|:...|||.:||:.||||.|...:...:
 Worm   412 KGYDANNVLFSPCSRKLIRDVLIGKWESCF-----QEEMTSFCGNGIVEDGEECDNGVDTDNEFN 471

  Fly   505 QCCDGITCKLKSEAQCA--SGACC-DQCRLRPKDYICRDSNN-ECDLPEYCDGEIGQCPSDVFKK 565
             |||.. |:|...|:|:  :..|| ..|:.....::|...:: .|.....|:|..|:|||....:
 Worm   472 -CCDKF-CRLAVGAKCSPLNHICCTPTCQFHNSTHVCLPGDSLLCKADAVCNGFSGECPSAPPVR 534

  Fly   566 NGSPCGLSKTGISGYCFQGYCPTLSLQ-----CEAIWGYGGSAADRQCYEQFNSKGSINGHCGRD 625
            :|..|......::|.|.. :|..:|:.     ||.:     ..:.|.|...:      ||.|...
 Worm   535 DGQECLEGGECLNGVCLP-FCEKMSIGKKSCICEDL-----ELSCRLCCRDY------NGTCAPV 587

  Fly   626 ANEHYIKCEPENVQCGTLQCKDGERQPVNDGIDQLYSRTIISIKGQEFECKATSGQV 682
            ....|::   :.|:|....|:|  |:.||:.:|.:.:..:|:.:        |:|.|
 Worm   588 PGHVYLR---DGVRCSKGSCRD--RKCVNEVVDNVRNYFLITFQ--------TTGGV 631

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mmdNP_001285311.1 Pep_M12B_propep 106..213 CDD:279848 30/120 (25%)
Reprolysin 270..473 CDD:279729 60/306 (20%)
ZnMc_adamalysin_II_like 270..471 CDD:239797 60/304 (20%)
Disintegrin 488..562 CDD:278623 24/77 (31%)
ACR 566..713 CDD:214743 26/122 (21%)
adm-4NP_509318.1 ZnMc_TACE_like 187..448 CDD:239798 56/290 (19%)
Disintegrin 455..528 CDD:306668 21/74 (28%)
ADAM17_MPD 552..610 CDD:271205 15/74 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D162519at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4147
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.950

Return to query results.
Submit another query.